Result of FASTA (omim) for
pFN21AE3003
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3003, 70 aa
1>>>pF1KE3003 70 - 70 aa - 70 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0276+/-0.000255; mu= 7.6014+/- 0.016
mean_var=46.9439+/- 9.180, 0's: 0 Z-trim(120.0): 77 B-trim: 6 in 1/53
Lambda= 0.187191
statistics sampled from 34652 (34730) to 34652 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.407), width: 16
Scan time: 3.890
The best scores are: opt bits E(85289)
NP_001230703 (OMIM: 606981) guanine nucleotide-bin ( 71) 351 101.4 1.3e-22
XP_011535148 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 351 101.4 1.3e-22
XP_006720236 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 351 101.4 1.3e-22
XP_016876865 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 351 101.4 1.3e-22
NP_001230702 (OMIM: 606981) guanine nucleotide-bin ( 71) 351 101.4 1.3e-22
XP_016876866 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 351 101.4 1.3e-22
NP_444292 (OMIM: 606981) guanine nucleotide-bindin ( 71) 351 101.4 1.3e-22
XP_006711824 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 321 93.3 3.8e-20
NP_004476 (OMIM: 604388) guanine nucleotide-bindin ( 75) 321 93.3 3.8e-20
NP_001092191 (OMIM: 604388) guanine nucleotide-bin ( 75) 321 93.3 3.8e-20
XP_011542469 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 321 93.3 3.8e-20
NP_001092192 (OMIM: 604388) guanine nucleotide-bin ( 75) 321 93.3 3.8e-20
NP_036334 (OMIM: 608941) guanine nucleotide-bindin ( 75) 290 84.9 1.2e-17
XP_006718563 (OMIM: 608941) PREDICTED: guanine nuc ( 75) 290 84.9 1.2e-17
XP_016882095 (OMIM: 604430) PREDICTED: guanine nuc ( 68) 263 77.6 1.8e-15
NP_443079 (OMIM: 604430) guanine nucleotide-bindin ( 68) 263 77.6 1.8e-15
XP_016857298 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 261 77.1 2.7e-15
NP_061329 (OMIM: 615405) guanine nucleotide-bindin ( 72) 261 77.1 2.7e-15
XP_016857299 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 261 77.1 2.7e-15
XP_016857300 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 261 77.1 2.7e-15
NP_005265 (OMIM: 600874) guanine nucleotide-bindin ( 68) 202 61.1 1.6e-10
NP_001185593 (OMIM: 604389) guanine nucleotide-bin ( 68) 201 60.8 2e-10
NP_001017998 (OMIM: 604389) guanine nucleotide-bin ( 68) 201 60.8 2e-10
NP_001316355 (OMIM: 189970) guanine nucleotide-bin ( 74) 148 46.5 4.3e-06
NP_068774 (OMIM: 189970) guanine nucleotide-bindin ( 74) 148 46.5 4.3e-06
NP_001185683 (OMIM: 139391) guanine nucleotide-bin ( 69) 145 45.7 7.1e-06
NP_001185685 (OMIM: 139391) guanine nucleotide-bin ( 69) 145 45.7 7.1e-06
NP_001185684 (OMIM: 139391) guanine nucleotide-bin ( 69) 145 45.7 7.1e-06
NP_113686 (OMIM: 139391) guanine nucleotide-bindin ( 69) 145 45.7 7.1e-06
NP_004117 (OMIM: 604390) guanine nucleotide-bindin ( 73) 143 45.2 1.1e-05
>>NP_001230703 (OMIM: 606981) guanine nucleotide-binding (71 aa)
initn: 358 init1: 351 opt: 351 Z-score: 526.9 bits: 101.4 E(85289): 1.3e-22
Smith-Waterman score: 351; 71.0% identity (97.1% similar) in 69 aa overlap (2-70:3-71)
10 20 30 40 50
pF1KE3 MSNNMAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAENP
::: :.::.::: :::::.:.::::.:::.:::.:.:.::.:::.:::.:::::.:::
NP_001 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60 70
pF1KE3 FRDKRLFCVLL
::.:..::..:
NP_001 FREKKFFCAIL
70
>>XP_011535148 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 358 init1: 351 opt: 351 Z-score: 526.9 bits: 101.4 E(85289): 1.3e-22
Smith-Waterman score: 351; 71.0% identity (97.1% similar) in 69 aa overlap (2-70:3-71)
10 20 30 40 50
pF1KE3 MSNNMAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAENP
::: :.::.::: :::::.:.::::.:::.:::.:.:.::.:::.:::.:::::.:::
XP_011 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60 70
pF1KE3 FRDKRLFCVLL
::.:..::..:
XP_011 FREKKFFCAIL
70
>>XP_006720236 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 358 init1: 351 opt: 351 Z-score: 526.9 bits: 101.4 E(85289): 1.3e-22
Smith-Waterman score: 351; 71.0% identity (97.1% similar) in 69 aa overlap (2-70:3-71)
10 20 30 40 50
pF1KE3 MSNNMAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAENP
::: :.::.::: :::::.:.::::.:::.:::.:.:.::.:::.:::.:::::.:::
XP_006 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60 70
pF1KE3 FRDKRLFCVLL
::.:..::..:
XP_006 FREKKFFCAIL
70
>>XP_016876865 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 358 init1: 351 opt: 351 Z-score: 526.9 bits: 101.4 E(85289): 1.3e-22
Smith-Waterman score: 351; 71.0% identity (97.1% similar) in 69 aa overlap (2-70:3-71)
10 20 30 40 50
pF1KE3 MSNNMAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAENP
::: :.::.::: :::::.:.::::.:::.:::.:.:.::.:::.:::.:::::.:::
XP_016 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60 70
pF1KE3 FRDKRLFCVLL
::.:..::..:
XP_016 FREKKFFCAIL
70
>>NP_001230702 (OMIM: 606981) guanine nucleotide-binding (71 aa)
initn: 358 init1: 351 opt: 351 Z-score: 526.9 bits: 101.4 E(85289): 1.3e-22
Smith-Waterman score: 351; 71.0% identity (97.1% similar) in 69 aa overlap (2-70:3-71)
10 20 30 40 50
pF1KE3 MSNNMAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAENP
::: :.::.::: :::::.:.::::.:::.:::.:.:.::.:::.:::.:::::.:::
NP_001 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60 70
pF1KE3 FRDKRLFCVLL
::.:..::..:
NP_001 FREKKFFCAIL
70
>>XP_016876866 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 358 init1: 351 opt: 351 Z-score: 526.9 bits: 101.4 E(85289): 1.3e-22
Smith-Waterman score: 351; 71.0% identity (97.1% similar) in 69 aa overlap (2-70:3-71)
10 20 30 40 50
pF1KE3 MSNNMAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAENP
::: :.::.::: :::::.:.::::.:::.:::.:.:.::.:::.:::.:::::.:::
XP_016 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60 70
pF1KE3 FRDKRLFCVLL
::.:..::..:
XP_016 FREKKFFCAIL
70
>>NP_444292 (OMIM: 606981) guanine nucleotide-binding pr (71 aa)
initn: 358 init1: 351 opt: 351 Z-score: 526.9 bits: 101.4 E(85289): 1.3e-22
Smith-Waterman score: 351; 71.0% identity (97.1% similar) in 69 aa overlap (2-70:3-71)
10 20 30 40 50
pF1KE3 MSNNMAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAENP
::: :.::.::: :::::.:.::::.:::.:::.:.:.::.:::.:::.:::::.:::
NP_444 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60 70
pF1KE3 FRDKRLFCVLL
::.:..::..:
NP_444 FREKKFFCAIL
70
>>XP_006711824 (OMIM: 604388) PREDICTED: guanine nucleot (75 aa)
initn: 326 init1: 300 opt: 321 Z-score: 482.7 bits: 93.3 E(85289): 3.8e-20
Smith-Waterman score: 321; 63.4% identity (94.4% similar) in 71 aa overlap (1-70:5-75)
10 20 30 40 50
pF1KE3 MSNN-MAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPA
:::: ..:..:::.:::::.:. .::.:::::::.:::.::.:...:::. ::::
XP_006 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
10 20 30 40 50 60
60 70
pF1KE3 AENPFRDKRLFCVLL
.:::::.:..::..:
XP_006 SENPFREKKFFCTIL
70
>>NP_004476 (OMIM: 604388) guanine nucleotide-binding pr (75 aa)
initn: 326 init1: 300 opt: 321 Z-score: 482.7 bits: 93.3 E(85289): 3.8e-20
Smith-Waterman score: 321; 63.4% identity (94.4% similar) in 71 aa overlap (1-70:5-75)
10 20 30 40 50
pF1KE3 MSNN-MAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPA
:::: ..:..:::.:::::.:. .::.:::::::.:::.::.:...:::. ::::
NP_004 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
10 20 30 40 50 60
60 70
pF1KE3 AENPFRDKRLFCVLL
.:::::.:..::..:
NP_004 SENPFREKKFFCTIL
70
>>NP_001092191 (OMIM: 604388) guanine nucleotide-binding (75 aa)
initn: 326 init1: 300 opt: 321 Z-score: 482.7 bits: 93.3 E(85289): 3.8e-20
Smith-Waterman score: 321; 63.4% identity (94.4% similar) in 71 aa overlap (1-70:5-75)
10 20 30 40 50
pF1KE3 MSNN-MAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPA
:::: ..:..:::.:::::.:. .::.:::::::.:::.::.:...:::. ::::
NP_001 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
10 20 30 40 50 60
60 70
pF1KE3 AENPFRDKRLFCVLL
.:::::.:..::..:
NP_001 SENPFREKKFFCTIL
70
70 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:20:16 2016 done: Sun Nov 6 13:20:17 2016
Total Scan time: 3.890 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]