Result of FASTA (omim) for
pFN21AE3002
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3002, 68 aa
1>>>pF1KE3002 68 - 68 aa - 68 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6724+/-0.000252; mu= 9.8744+/- 0.016
mean_var=51.0832+/-10.141, 0's: 0 Z-trim(120.1): 37 B-trim: 0 in 0/57
Lambda= 0.179447
statistics sampled from 34984 (35021) to 34984 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.411), width: 16
Scan time: 3.930
The best scores are: opt bits E(85289)
NP_005265 (OMIM: 600874) guanine nucleotide-bindin ( 68) 436 119.5 4.2e-28
NP_001185593 (OMIM: 604389) guanine nucleotide-bin ( 68) 264 75.0 1.1e-14
NP_001017998 (OMIM: 604389) guanine nucleotide-bin ( 68) 264 75.0 1.1e-14
NP_443079 (OMIM: 604430) guanine nucleotide-bindin ( 68) 254 72.4 6.4e-14
XP_016882095 (OMIM: 604430) PREDICTED: guanine nuc ( 68) 254 72.4 6.4e-14
XP_016857299 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 234 67.2 2.4e-12
XP_016857298 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 234 67.2 2.4e-12
NP_061329 (OMIM: 615405) guanine nucleotide-bindin ( 72) 234 67.2 2.4e-12
XP_016857300 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 234 67.2 2.4e-12
XP_016876866 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 226 65.1 1e-11
XP_006720236 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 226 65.1 1e-11
XP_011535148 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 226 65.1 1e-11
NP_444292 (OMIM: 606981) guanine nucleotide-bindin ( 71) 226 65.1 1e-11
NP_001230703 (OMIM: 606981) guanine nucleotide-bin ( 71) 226 65.1 1e-11
NP_001230702 (OMIM: 606981) guanine nucleotide-bin ( 71) 226 65.1 1e-11
XP_016876865 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 226 65.1 1e-11
NP_001092191 (OMIM: 604388) guanine nucleotide-bin ( 75) 211 61.3 1.6e-10
XP_006711824 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 211 61.3 1.6e-10
NP_001092192 (OMIM: 604388) guanine nucleotide-bin ( 75) 211 61.3 1.6e-10
XP_011542469 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 211 61.3 1.6e-10
NP_004476 (OMIM: 604388) guanine nucleotide-bindin ( 75) 211 61.3 1.6e-10
XP_006718563 (OMIM: 608941) PREDICTED: guanine nuc ( 75) 210 61.0 1.9e-10
NP_036334 (OMIM: 608941) guanine nucleotide-bindin ( 75) 210 61.0 1.9e-10
NP_004117 (OMIM: 604390) guanine nucleotide-bindin ( 73) 132 40.8 0.00022
NP_113686 (OMIM: 139391) guanine nucleotide-bindin ( 69) 131 40.5 0.00025
NP_001185685 (OMIM: 139391) guanine nucleotide-bin ( 69) 131 40.5 0.00025
NP_001185683 (OMIM: 139391) guanine nucleotide-bin ( 69) 131 40.5 0.00025
NP_001185684 (OMIM: 139391) guanine nucleotide-bin ( 69) 131 40.5 0.00025
NP_001316355 (OMIM: 189970) guanine nucleotide-bin ( 74) 113 35.9 0.0067
NP_068774 (OMIM: 189970) guanine nucleotide-bindin ( 74) 113 35.9 0.0067
>>NP_005265 (OMIM: 600874) guanine nucleotide-binding pr (68 aa)
initn: 436 init1: 436 opt: 436 Z-score: 625.6 bits: 119.5 E(85289): 4.2e-28
Smith-Waterman score: 436; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
10 20 30 40 50 60
pF1KE3 PQKVCSFL
::::::::
NP_005 PQKVCSFL
>>NP_001185593 (OMIM: 604389) guanine nucleotide-binding (68 aa)
initn: 280 init1: 264 opt: 264 Z-score: 384.9 bits: 75.0 E(85289): 1.1e-14
Smith-Waterman score: 264; 52.9% identity (91.2% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
::...:..:....:.::.::::..:.:::::::.:.:.:.::: .: ::.:: ...::::
NP_001 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
10 20 30 40 50 60
pF1KE3 PQKVCSFL
. :..:
NP_001 EPRSCALL
>>NP_001017998 (OMIM: 604389) guanine nucleotide-binding (68 aa)
initn: 280 init1: 264 opt: 264 Z-score: 384.9 bits: 75.0 E(85289): 1.1e-14
Smith-Waterman score: 264; 52.9% identity (91.2% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
::...:..:....:.::.::::..:.:::::::.:.:.:.::: .: ::.:: ...::::
NP_001 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
10 20 30 40 50 60
pF1KE3 PQKVCSFL
. :..:
NP_001 EPRSCALL
>>NP_443079 (OMIM: 604430) guanine nucleotide-binding pr (68 aa)
initn: 258 init1: 254 opt: 254 Z-score: 370.9 bits: 72.4 E(85289): 6.4e-14
Smith-Waterman score: 254; 51.5% identity (86.8% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
::.....: .:.:.:::.:::..:.:::.::.:: ..: :.:..::::.:: .: :::.
NP_443 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
10 20 30 40 50 60
pF1KE3 PQKVCSFL
.: : .:
NP_443 DKKPCIIL
>>XP_016882095 (OMIM: 604430) PREDICTED: guanine nucleot (68 aa)
initn: 258 init1: 254 opt: 254 Z-score: 370.9 bits: 72.4 E(85289): 6.4e-14
Smith-Waterman score: 254; 51.5% identity (86.8% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
::.....: .:.:.:::.:::..:.:::.::.:: ..: :.:..::::.:: .: :::.
XP_016 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
10 20 30 40 50 60
pF1KE3 PQKVCSFL
.: : .:
XP_016 DKKPCIIL
>>XP_016857299 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 231 init1: 216 opt: 234 Z-score: 342.6 bits: 67.2 E(85289): 2.4e-12
Smith-Waterman score: 234; 46.3% identity (85.1% similar) in 67 aa overlap (2-68:6-72)
10 20 30 40 50
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSST
......: ...::::::::...:.:::.:.::: ..: ..:. :::: :. .:
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
60
pF1KE3 NPFRPQKVCSFL
:::. .:.: .:
XP_016 NPFKDKKTCIIL
70
>>XP_016857298 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 231 init1: 216 opt: 234 Z-score: 342.6 bits: 67.2 E(85289): 2.4e-12
Smith-Waterman score: 234; 46.3% identity (85.1% similar) in 67 aa overlap (2-68:6-72)
10 20 30 40 50
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSST
......: ...::::::::...:.:::.:.::: ..: ..:. :::: :. .:
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
60
pF1KE3 NPFRPQKVCSFL
:::. .:.: .:
XP_016 NPFKDKKTCIIL
70
>>NP_061329 (OMIM: 615405) guanine nucleotide-binding pr (72 aa)
initn: 231 init1: 216 opt: 234 Z-score: 342.6 bits: 67.2 E(85289): 2.4e-12
Smith-Waterman score: 234; 46.3% identity (85.1% similar) in 67 aa overlap (2-68:6-72)
10 20 30 40 50
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSST
......: ...::::::::...:.:::.:.::: ..: ..:. :::: :. .:
NP_061 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
60
pF1KE3 NPFRPQKVCSFL
:::. .:.: .:
NP_061 NPFKDKKTCIIL
70
>>XP_016857300 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 231 init1: 216 opt: 234 Z-score: 342.6 bits: 67.2 E(85289): 2.4e-12
Smith-Waterman score: 234; 46.3% identity (85.1% similar) in 67 aa overlap (2-68:6-72)
10 20 30 40 50
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSST
......: ...::::::::...:.:::.:.::: ..: ..:. :::: :. .:
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
60
pF1KE3 NPFRPQKVCSFL
:::. .:.: .:
XP_016 NPFKDKKTCIIL
70
>>XP_016876866 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 197 init1: 187 opt: 226 Z-score: 331.5 bits: 65.1 E(85289): 1e-11
Smith-Waterman score: 226; 48.5% identity (82.4% similar) in 68 aa overlap (2-68:4-71)
10 20 30 40 50
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNP
....:.: .:.:.::..::...:.:::.::::: .: .:..::::: : .: ::
XP_016 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60
pF1KE3 FRPQKV-CSFL
:: .: :..:
XP_016 FREKKFFCAIL
70
68 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 19:14:55 2016 done: Sun Nov 6 19:14:55 2016
Total Scan time: 3.930 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]