FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3002, 68 aa
  1>>>pF1KE3002 68 - 68 aa - 68 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8561+/-0.000501; mu= 8.5542+/- 0.030
 mean_var=49.1863+/- 9.960, 0's: 0 Z-trim(113.1): 15  B-trim: 545 in 1/50
 Lambda= 0.182874
 statistics sampled from 13791 (13806) to 13791 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.424), width:  16
 Scan time:  1.400

The best scores are:                                      opt bits E(32554)
CCDS696.1 GNG5 gene_id:2787|Hs108|chr1             (  68)  436 121.6 3.7e-29
CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9          (  68)  264 76.2 1.7e-15
CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19          (  68)  254 73.6 1.1e-14
CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1         (  72)  234 68.3 4.3e-13
CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14         (  71)  226 66.2 1.8e-12
CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1            (  75)  211 62.3   3e-11
CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11           (  75)  210 62.0 3.6e-11


>>CCDS696.1 GNG5 gene_id:2787|Hs108|chr1                  (68 aa)
 initn: 436 init1: 436 opt: 436  Z-score: 637.0  bits: 121.6 E(32554): 3.7e-29
Smith-Waterman score: 436; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
               10        20        30        40        50        60

               
pF1KE3 PQKVCSFL
       ::::::::
CCDS69 PQKVCSFL
               

>>CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9               (68 aa)
 initn: 280 init1: 264 opt: 264  Z-score: 391.7  bits: 76.2 E(32554): 1.7e-15
Smith-Waterman score: 264; 52.9% identity (91.2% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
       ::...:..:....:.::.::::..:.:::::::.:.:.:.::: .: ::.:: ...::::
CCDS35 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
               10        20        30        40        50        60

               
pF1KE3 PQKVCSFL
         . :..:
CCDS35 EPRSCALL
               

>>CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19               (68 aa)
 initn: 258 init1: 254 opt: 254  Z-score: 377.4  bits: 73.6 E(32554): 1.1e-14
Smith-Waterman score: 254; 51.5% identity (86.8% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
       ::.....:  .:.:.:::.:::..:.:::.::.:: ..: :.:..::::.:: .: :::.
CCDS12 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
               10        20        30        40        50        60

               
pF1KE3 PQKVCSFL
        .: : .:
CCDS12 DKKPCIIL
               

>>CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1              (72 aa)
 initn: 231 init1: 216 opt: 234  Z-score: 348.5  bits: 68.3 E(32554): 4.3e-13
Smith-Waterman score: 234; 46.3% identity (85.1% similar) in 67 aa overlap (2-68:6-72)

                   10        20        30        40        50      
pF1KE3     MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSST
            ......:  ...::::::::...:.:::.:.::: ..: ..:. :::: :. .: 
CCDS30 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
               10        20        30        40        50        60

         60        
pF1KE3 NPFRPQKVCSFL
       :::. .:.: .:
CCDS30 NPFKDKKTCIIL
               70  

>>CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14              (71 aa)
 initn: 197 init1: 187 opt: 226  Z-score: 337.2  bits: 66.2 E(32554): 1.8e-12
Smith-Waterman score: 226; 48.5% identity (82.4% similar) in 68 aa overlap (2-68:4-71)

                 10        20        30        40        50        
pF1KE3   MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNP
          ....:.:  .:.:.::..::...:.:::.:::::  .:  .:..::::: : .: ::
CCDS32 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
               10        20        30        40        50        60

       60         
pF1KE3 FRPQKV-CSFL
       :: .:  :..:
CCDS32 FREKKFFCAIL
               70 

>>CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1                 (75 aa)
 initn: 189 init1: 175 opt: 211  Z-score: 315.5  bits: 62.3 E(32554): 3e-11
Smith-Waterman score: 211; 45.6% identity (79.4% similar) in 68 aa overlap (2-68:8-75)

                     10        20        30        40        50    
pF1KE3       MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSS
              ....:..  .:.:.::..:: ..:::::::::::  .:  ....:::.  : .
CCDS16 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

           60         
pF1KE3 STNPFRPQKV-CSFL
       : :::: .:  :..:
CCDS16 SENPFREKKFFCTIL
               70     

>>CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11                (75 aa)
 initn: 177 init1: 177 opt: 210  Z-score: 314.0  bits: 62.0 E(32554): 3.6e-11
Smith-Waterman score: 210; 46.4% identity (78.3% similar) in 69 aa overlap (1-68:7-75)

                     10        20        30        40        50    
pF1KE3       MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSS
             .... :..  .:.:.::..::.: :.:::.:::::  .:  .: .:::.: : .
CCDS80 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
               10        20        30        40        50        60

           60         
pF1KE3 STNPFRPQKV-CSFL
       : :::: .:  :..:
CCDS80 SENPFREKKFFCALL
               70     




68 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:14:54 2016 done: Sun Nov  6 19:14:54 2016
 Total Scan time:  1.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]