FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2784, 325 aa
  1>>>pF1KE2784     325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9812+/-0.000659; mu= 0.8657+/- 0.040
 mean_var=181.5556+/-36.619, 0's: 0 Z-trim(117.3): 5  B-trim: 0 in 0/52
 Lambda= 0.095185
 statistics sampled from 18232 (18237) to 18232 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.546), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(33420)
CCDS6223.1 ZC2HC1A gene_id:51101|Hs109|chr8        ( 325) 2265 322.2 3.6e-88
CCDS47495.1 ZC2HC1B gene_id:153918|Hs109|chr6      ( 222)  607 94.4 9.1e-20


>>CCDS6223.1 ZC2HC1A gene_id:51101|Hs109|chr8             (325 aa)
 initn: 2265 init1: 2265 opt: 2265  Z-score: 1696.5  bits: 322.2 E(33420): 3.6e-88
Smith-Waterman score: 2265; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KE2 MEGLEENGGVVQVGELLPCKICGRTFFPVALKKHGPICQKTATKKRKTFDSSRQRAEGTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MEGLEENGGVVQVGELLPCKICGRTFFPVALKKHGPICQKTATKKRKTFDSSRQRAEGTD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 IPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPSYDPDYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 IPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPSYDPDYI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 QCPYCQRRFNENAADRHINFCKEQAARISNKGKFSTDTKGKPTSRTQVYKPPALKKSNSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QCPYCQRRFNENAADRHINFCKEQAARISNKGKFSTDTKGKPTSRTQVYKPPALKKSNSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 GTASSGSSRLPQPSGAGKTVVGVPSGKVSSSSSSLGNKLQTLSPSHKGIAAPHAGANVKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GTASSGSSRLPQPSGAGKTVVGVPSGKVSSSSSSLGNKLQTLSPSHKGIAAPHAGANVKP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 RNSTPPSLARNPAPGVLTNKRKTYTESYIARPDGDCASSLNGGNIKGIEGHSPGNLPKFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RNSTPPSLARNPAPGVLTNKRKTYTESYIARPDGDCASSLNGGNIKGIEGHSPGNLPKFC
              250       260       270       280       290       300

              310       320     
pF1KE2 HECGTKYPVEWAKFCCECGIRRMIL
       :::::::::::::::::::::::::
CCDS62 HECGTKYPVEWAKFCCECGIRRMIL
              310       320     

>>CCDS47495.1 ZC2HC1B gene_id:153918|Hs109|chr6           (222 aa)
 initn: 633 init1: 594 opt: 607  Z-score: 468.6  bits: 94.4 E(33420): 9.1e-20
Smith-Waterman score: 607; 47.0% identity (68.8% similar) in 215 aa overlap (15-227:14-220)

               10        20        30        40        50        60
pF1KE2 MEGLEENGGVVQVGELLPCKICGRTFFPVALKKHGPICQKTATKKRKTFDSSRQRAEGTD
                     ::.::..::: :   .:..:::::.:  ..::: :.: .:: .:::
CCDS47  MAGAEPFLADGNQELFPCEVCGRRFAADVLERHGPICKKLFNRKRKPFSSLKQRLQGTD
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE2 IPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPSYDPDYI
       :::::       :: . ::::..::.:: .::.::    :.:::  :::::::: .::::
CCDS47 IPTVKKTPQSKSPPVRKSNWRQQHEDFINAIRSAKQCMLAIKEGRPLPPPPPPSLNPDYI
      60        70        80        90       100       110         

              130       140        150       160       170         
pF1KE2 QCPYCQRRFNENAADRHINFCKEQAAR-ISNKGKFSTDTKGKPTSRTQVYKPPALKKSNS
       : :::.:::::.::.:: ::::.:..: . : ..    : .: .::.:     . ::   
CCDS47 QRPYCMRRFNESAAERHTNFCKDQSSRRVFNPAQ----TAAKLASRAQGRAQMGPKKE--
     120       130       140       150           160       170     

     180       190       200       210        220       230        
pF1KE2 PGTASSGSSRLPQPSGAGKTVVGVPSGKVSSSSSSLGNKL-QTLSPSHKGIAAPHAGANV
       : ..:. .. : .   .. . : . :: . . .:  : :: : .: : :           
CCDS47 PTVTSAVGALLQNRVLVATNEVPTKSGLAMDPAS--GAKLRQGFSKSSKKD         
           180       190       200         210       220           

      240       250       260       270       280       290        
pF1KE2 KPRNSTPPSLARNPAPGVLTNKRKTYTESYIARPDGDCASSLNGGNIKGIEGHSPGNLPK




325 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Feb 19 20:39:47 2021 done: Fri Feb 19 20:39:47 2021
 Total Scan time:  1.500 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]