FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2769, 471 aa
  1>>>pF1KE2769     471 - 471 aa - 471 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8300+/-0.00084; mu= 7.3391+/- 0.051
 mean_var=147.7595+/-29.343, 0's: 0 Z-trim(112.3): 55  B-trim: 3 in 1/52
 Lambda= 0.105511
 statistics sampled from 13235 (13290) to 13235 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.398), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(33420)
CCDS11748.1 ST6GALNAC1 gene_id:55808|Hs109|chr17   ( 600) 2915 455.3 8.5e-128
CCDS11747.1 ST6GALNAC2 gene_id:10610|Hs109|chr17   ( 374)  399 72.1 1.1e-12


>>CCDS11748.1 ST6GALNAC1 gene_id:55808|Hs109|chr17        (600 aa)
 initn: 2915 init1: 2915 opt: 2915  Z-score: 2408.0  bits: 455.3 E(33420): 8.5e-128
Smith-Waterman score: 2915; 99.5% identity (100.0% similar) in 437 aa overlap (1-437:1-437)

               10        20        30        40        50        60
pF1KE2 MRSCLWRCRHLSQGVQWSLLLAVLVFFLFALPSFIKEPQTKPSRHQRTENIKERSLQSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MRSCLWRCRHLSQGVQWSLLLAVLVFFLFALPSFIKEPQTKPSRHQRTENIKERSLQSLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KPKSQAPTRARRTTIYAEPVPENNALNTQTQPKAHTTGDRGKEANQAPPEEQDKVPHTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KPKSQAPTRARRTTIYAEPVPENNALNTQTQPKAHTTGDRGKEANQAPPEEQDKVPHTAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 RAAWKSPEKEKTMVNTLSPRGQDAGMASGRTEAQSWKSQDTKTTKGNGGQTRKLTASRTV
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS11 RAAWKSPEKEKTMVNTLSPRGQDAGMASGRTEAQSWKSQDTKTTQGNGGQTRKLTASRTV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 SEKHQGKAATTAKTLIPKSQHRMLAPTGAVSTRTRQKGVTTAVIPPKEKKPQATPPPAPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SEKHQGKAATTAKTLIPKSQHRMLAPTGAVSTRTRQKGVTTAVIPPKEKKPQATPPPAPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 QSPTTQRNQRLKAANFKSEPRWDFEEKYSFEIGGLQTTCPDSVKIKASKSLWLQKLFLPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QSPTTQRNQRLKAANFKSEPRWDFEEKYSFEIGGLQTTCPDSVKIKASKSLWLQKLFLPN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 LTLFLDSRHFNQSEWDRLEHFAPPFGFMELNYSLVQKVVTRFPPVPQQQLLLASLPAGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LTLFLDSRHFNQSEWDRLEHFAPPFGFMELNYSLVQKVVTRFPPVPQQQLLLASLPAGSL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 RCITCAVVGNGGILNNSHIGQEIDSHDYVFRLSGALIKGYEQDVGTRTSFYGFTAFSLTQ
       ::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
CCDS11 RCITCAVVGNGGILNNSHMGQEIDSHDYVFRLSGALIKGYEQDVGTRTSFYGFTAFSLTQ
              370       380       390       400       410       420

              430       440       450       460       470          
pF1KE2 SLLILGNRGFKNVPLGKAQTPGSFSGSPAHGQVPVAAPRLSPIHEEQVSEV         
       :::::::::::::::::                                           
CCDS11 SLLILGNRGFKNVPLGKDVRYLHFLEGTRDYEWLEALLMNQTVMSKNLFWFRHRPQEAFR
              430       440       450       460       470       480

>>CCDS11747.1 ST6GALNAC2 gene_id:10610|Hs109|chr17        (374 aa)
 initn: 385 init1: 335 opt: 399  Z-score: 341.2  bits: 72.1 E(33420): 1.1e-12
Smith-Waterman score: 399; 37.9% identity (66.7% similar) in 174 aa overlap (264-437:51-223)

           240       250       260       270       280       290   
pF1KE2 TPPPAPFQSPTTQRNQRLKAANFKSEPRWDFEEKYSFEIGGLQTTCPDSVKIKASKSLWL
                                     :. : :    :   .:   ...  ..   .
CCDS11 GLLFALYFSAVQRYPGPAAGARDTTSFEAFFQSKASNSWTGKGQACRHLLHLAIQRHPHF
               30        40        50        60        70        80

           300       310       320       330       340       350   
pF1KE2 QKLFLPNLTLFLDSRHFNQSEWDRLEHFAPPFGFMELNYSLVQKVVTRFPPVPQQQLLLA
       . ::  .. ..: .  :. . :::: .   :.:.  :..... .... .    . .:.  
CCDS11 RGLFNLSIPVLLWGDLFTPALWDRLSQHKAPYGWRGLSHQVIASTLSLLNGSESAKLFAP
               90       100       110       120       130       140

           360       370       380       390       400       410   
pF1KE2 SLPAGSLRCITCAVVGNGGILNNSHIGQEIDSHDYVFRLSGALIKGYEQDVGTRTSFYGF
          .   .:: :::::::::::.:. : .::.:::::::.::.:::.:.::::.::::::
CCDS11 PRDTPP-KCIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGF
               150       160       170       180       190         

           420       430       440       450       460       470   
pF1KE2 TAFSLTQSLLILGNRGFKNVPLGKAQTPGSFSGSPAHGQVPVAAPRLSPIHEEQVSEV  
       :. .. .::.   : :: .:: :.                                    
CCDS11 TVNTMKNSLVSYWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKGDRP
     200       210       220       230       240       250         




471 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Jul  3 20:43:17 2020 done: Fri Jul  3 20:43:17 2020
 Total Scan time:  1.750 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]