Result of FASTA (ccds) for
pFN21AE2766
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2766, 271 aa
1>>>pF1KE2766 271 - 271 aa - 271 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3993+/-0.000661; mu= 14.6360+/- 0.040
mean_var=66.2179+/-13.474, 0's: 0 Z-trim(110.5): 7 B-trim: 0 in 0/52
Lambda= 0.157611
statistics sampled from 11840 (11846) to 11840 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.354), width: 16
Scan time: 1.180
The best scores are: opt bits E(33420)
CCDS10445.1 NUBP2 gene_id:10101|Hs109|chr16 ( 271) 1818 421.7 2.8e-118
CCDS66898.1 NUBP2 gene_id:10101|Hs109|chr16 ( 211) 1435 334.5 3.8e-92
CCDS10543.1 NUBP1 gene_id:4682|Hs109|chr16 ( 320) 949 224.1 1e-58
CCDS61839.1 NUBP1 gene_id:4682|Hs109|chr16 ( 309) 690 165.2 5.2e-41
CCDS41940.1 NUBPL gene_id:80224|Hs109|chr14 ( 319) 587 141.8 6e-34
>>CCDS10445.1 NUBP2 gene_id:10101|Hs109|chr16 (271 aa)
initn: 1818 init1: 1818 opt: 1818 Z-score: 2237.0 bits: 421.7 E(33420): 2.8e-118
Smith-Waterman score: 1818; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)
10 20 30 40 50 60
pF1KE2 MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 MLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VAWGELDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VAWGELDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GLRVMGIVENMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GLRVMGIVENMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEGH
190 200 210 220 230 240
250 260 270
pF1KE2 DFIQEFPGSPAFAALTSIAQKILDATPACLP
:::::::::::::::::::::::::::::::
CCDS10 DFIQEFPGSPAFAALTSIAQKILDATPACLP
250 260 270
>>CCDS66898.1 NUBP2 gene_id:10101|Hs109|chr16 (211 aa)
initn: 1435 init1: 1435 opt: 1435 Z-score: 1768.0 bits: 334.5 E(33420): 3.8e-92
Smith-Waterman score: 1435; 100.0% identity (100.0% similar) in 211 aa overlap (61-271:1-211)
40 50 60 70 80 90
pF1KE2 ISTELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAVHQCDRGWAPVFLDREQSISLM
::::::::::::::::::::::::::::::
CCDS66 MLGAQGRAVHQCDRGWAPVFLDREQSISLM
10 20 30
100 110 120 130 140 150
pF1KE2 SVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSDEHMATIEALRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSDEHMATIEALRP
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE2 YQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVFSRGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVFSRGG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE2 GEELAQLAGVPFLGSVPLDPALMRTLEEGHDFIQEFPGSPAFAALTSIAQKILDATPACL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GEELAQLAGVPFLGSVPLDPALMRTLEEGHDFIQEFPGSPAFAALTSIAQKILDATPACL
160 170 180 190 200 210
pF1KE2 P
:
CCDS66 P
>>CCDS10543.1 NUBP1 gene_id:4682|Hs109|chr16 (320 aa)
initn: 804 init1: 542 opt: 949 Z-score: 1168.0 bits: 224.1 E(33420): 1e-58
Smith-Waterman score: 949; 53.0% identity (80.6% similar) in 253 aa overlap (13-262:53-303)
10 20 30 40
pF1KE2 MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALAL-RH
:.: ::::::::::::::.:..:: .: .
CCDS10 QGCPNQRLCASGAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAED
30 40 50 60 70 80
50 60 70 80 90 100
pF1KE2 AGKKVGILDVDLCGPSIPRMLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDE
. ....::.:.::::::...: .:. ::: ::.::.. :.....::::::: .::.
CCDS10 ENTQIALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYV--EDNLGVMSVGFLLSSPDD
90 100 110 120 130 140
110 120 130 140 150 160
pF1KE2 AVVWRGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTT
::.:::::::..::::. :: :::.:::.:::::::::::..... : . ::...::
CCDS10 AVIWRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITT
150 160 170 180 190 200
170 180 190 200 210
pF1KE2 PQAVSVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVF--SRGGGEELAQLAG
:: ::. :::.:..::::. : ..:.::::::: ::.: . ...: . ::.: . :
CCDS10 PQEVSLQDVRKEINFCRKVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLE
210 220 230 240 250 260
220 230 240 250 260 270
pF1KE2 VPFLGSVPLDPALMRTLEEGHDFIQEFPGSPAFAALTSIAQKILDATPACLP
::.:: ::::: . .. ..:..:. . : ::: : :: :.:
CCDS10 VPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSIIQRIQEFCNLHQSKEENLISS
270 280 290 300 310 320
>>CCDS61839.1 NUBP1 gene_id:4682|Hs109|chr16 (309 aa)
initn: 854 init1: 542 opt: 690 Z-score: 850.0 bits: 165.2 E(33420): 5.2e-41
Smith-Waterman score: 860; 50.2% identity (76.7% similar) in 253 aa overlap (13-262:53-292)
10 20 30 40
pF1KE2 MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALAL-RH
:.: ::::::::::::::.:..:: .: .
CCDS61 QGCPNQRLCASGAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAED
30 40 50 60 70 80
50 60 70 80 90 100
pF1KE2 AGKKVGILDVDLCGPSIPRMLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDE
. ....::.:.::::::...: .:. :.....::::::: .::.
CCDS61 ENTQIALLDIDICGPSIPKIMGLEGEQY-------------VEDNLGVMSVGFLLSSPDD
90 100 110 120
110 120 130 140 150 160
pF1KE2 AVVWRGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTT
::.:::::::..::::. :: :::.:::.:::::::::::..... : . ::...::
CCDS61 AVIWRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITT
130 140 150 160 170 180
170 180 190 200 210
pF1KE2 PQAVSVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVF--SRGGGEELAQLAG
:: ::. :::.:..::::. : ..:.::::::: ::.: . ...: . ::.: . :
CCDS61 PQEVSLQDVRKEINFCRKVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE2 VPFLGSVPLDPALMRTLEEGHDFIQEFPGSPAFAALTSIAQKILDATPACLP
::.:: ::::: . .. ..:..:. . : ::: : :: :.:
CCDS61 VPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSIIQRIQEFCNLHQSKEENLISS
250 260 270 280 290 300
>>CCDS41940.1 NUBPL gene_id:80224|Hs109|chr14 (319 aa)
initn: 607 init1: 227 opt: 587 Z-score: 723.2 bits: 141.8 E(33420): 6e-34
Smith-Waterman score: 587; 37.4% identity (68.3% similar) in 262 aa overlap (10-268:63-316)
10 20 30
pF1KE2 MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALAL
. ::...:.: :::::::::: ...:::::
CCDS41 CGRQLSGAGSETLKQRRTQIMSRGLPKQKPIEGVKQVIVVASGKGGVGKSTTAVNLALAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE2 --RHAGKKVGILDVDLCGPSIPRMLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLE
..: .:.::::. :::.:.:.. .: . . :.. . .:. ::.:::.:
CCDS41 AANDSSKAIGLLDVDVYGPSVPKMMNLKGNPELSQSNLMRPLL---NYGIACMSMGFLVE
100 110 120 130 140
100 110 120 130 140 150
pF1KE2 KPDEAVVWRGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSDEHMATIEALRPYQPL-GA
. .: ::::: . :.... .: ::.::::::: ::::.: .... . . :. ::
CCDS41 E-SEPVVWRGLMVMSAIEKLLRQVDWGQLDYLVVDMPPGTGDVQLSVSQNI----PITGA
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE2 LVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVFSRGGGEELAQ
..:.::: ... :... . :.. . :.:.:.::: : ::.: . : .:. :...:::
CCDS41 VIVSTPQDIALMDAHKGAEMFRRVHVPVLGLVQNMSVFQCPKCKHKTHIFGADGARKLAQ
210 220 230 240 250 260
220 230 240 250 260 270
pF1KE2 LAGVPFLGSVPLDPALMRTLEEGHDFIQEFPGSPAFAALTSIAQKILDATPACLP
:. ::..:: . .. . :. .. : : : :: ... :.
CCDS41 TLGLEVLGDIPLHLNIREASDTGQPIVFSQPESDEAKAYLRIAVEVVRRLPSPSE
270 280 290 300 310
271 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Jul 3 20:33:54 2020 done: Fri Jul 3 20:33:54 2020
Total Scan time: 1.180 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]