Result of FASTA (omim) for
pFN21AE2753
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2753, 69 aa
1>>>pF1KE2753 69 - 69 aa - 69 aa
Library: /omim/omim.rfq.tfa
65951994 residues in 93482 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3306+/-0.000257; mu= 11.1021+/- 0.016
mean_var=48.0240+/- 9.434, 0's: 0 Z-trim(120.5): 13 B-trim: 1571 in 2/54
Lambda= 0.185074
statistics sampled from 37546 (37562) to 37546 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.402), width: 16
Scan time: 2.500
The best scores are: opt bits E(93482)
NP_001354761 (OMIM: 138322,250220) phospholipid hy ( 170) 505 141.6 2.6e-34
NP_002076 (OMIM: 138322,250220) phospholipid hydro ( 197) 505 141.6 2.9e-34
NP_001034937 (OMIM: 138322,250220) phospholipid hy ( 234) 505 141.7 3.4e-34
NP_001034936 (OMIM: 138322,250220) phospholipid hy ( 227) 299 86.7 1.2e-17
NP_056511 (OMIM: 615784) glutathione peroxidase 7 ( 187) 125 40.2 0.00098
NP_001293130 (OMIM: 617172) probable glutathione p ( 116) 113 36.8 0.0061
NP_001293126 (OMIM: 617172) probable glutathione p ( 158) 113 36.9 0.0079
NP_001008398 (OMIM: 617172) probable glutathione p ( 209) 113 37.0 0.0098
XP_006714694 (OMIM: 617172) probable glutathione p ( 210) 113 37.0 0.0099
>>NP_001354761 (OMIM: 138322,250220) phospholipid hydrop (170 aa)
initn: 505 init1: 505 opt: 505 Z-score: 737.7 bits: 141.6 E(93482): 2.6e-34
Smith-Waterman score: 505; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:102-170)
10 20 30
pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG
::::::::::::::::::::::::::::::
NP_001 AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG
80 90 100 110 120 130
40 50 60
pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF
:::::::::::::::::::::::::::::::::::::::
NP_001 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF
140 150 160 170
>>NP_002076 (OMIM: 138322,250220) phospholipid hydropero (197 aa)
initn: 505 init1: 505 opt: 505 Z-score: 736.8 bits: 141.6 E(93482): 2.9e-34
Smith-Waterman score: 505; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:129-197)
10 20 30
pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG
::::::::::::::::::::::::::::::
NP_002 AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG
100 110 120 130 140 150
40 50 60
pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF
:::::::::::::::::::::::::::::::::::::::
NP_002 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF
160 170 180 190
>>NP_001034937 (OMIM: 138322,250220) phospholipid hydrop (234 aa)
initn: 505 init1: 505 opt: 505 Z-score: 735.7 bits: 141.7 E(93482): 3.4e-34
Smith-Waterman score: 505; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:166-234)
10 20 30
pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG
::::::::::::::::::::::::::::::
NP_001 AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG
140 150 160 170 180 190
40 50 60
pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF
:::::::::::::::::::::::::::::::::::::::
NP_001 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF
200 210 220 230
>>NP_001034936 (OMIM: 138322,250220) phospholipid hydrop (227 aa)
initn: 311 init1: 299 opt: 299 Z-score: 438.6 bits: 86.7 E(93482): 1.2e-17
Smith-Waterman score: 299; 100.0% identity (100.0% similar) in 40 aa overlap (1-40:129-168)
10 20 30
pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG
::::::::::::::::::::::::::::::
NP_001 AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG
100 110 120 130 140 150
40 50 60
pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF
::::::::::
NP_001 NAIKWNFTKFGHRLSTVPHRQERLRGEALRTHGGAPGDREGPAPLFLAPQVCGPARAPAH
160 170 180 190 200 210
>>NP_056511 (OMIM: 615784) glutathione peroxidase 7 prec (187 aa)
initn: 141 init1: 76 opt: 125 Z-score: 188.8 bits: 40.2 E(93482): 0.00098
Smith-Waterman score: 125; 42.6% identity (59.3% similar) in 54 aa overlap (1-54:114-161)
10 20 30
pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG
::::: :.: ::: .:.. : .::
NP_056 FPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLA-QTSGK----
90 100 110 120 130
40 50 60
pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF
::: :.:. .: :: . :
NP_056 -EPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL
140 150 160 170 180
>>NP_001293130 (OMIM: 617172) probable glutathione perox (116 aa)
initn: 114 init1: 91 opt: 113 Z-score: 174.4 bits: 36.8 E(93482): 0.0061
Smith-Waterman score: 113; 33.3% identity (65.2% similar) in 66 aa overlap (1-65:43-101)
10 20 30
pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG
.: :: . :....: .... . : .
NP_001 GPRAKFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEP---
20 30 40 50 60
40 50 60
pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPL-VIEKDLPHYF
.::: :.:.. .: ::: . : :::. ::. :.
NP_001 ---RWNFWKYLVNPEGQVVKFWKP-EEPIEVIRPDIAALVRQVIIKKKEDL
70 80 90 100 110
>>NP_001293126 (OMIM: 617172) probable glutathione perox (158 aa)
initn: 116 init1: 91 opt: 113 Z-score: 172.5 bits: 36.9 E(93482): 0.0079
Smith-Waterman score: 113; 33.3% identity (65.2% similar) in 66 aa overlap (1-65:85-143)
10 20 30
pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG
.: :: . :....: .... . : .
NP_001 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEP---
60 70 80 90 100 110
40 50 60
pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPL-VIEKDLPHYF
.::: :.:.. .: ::: . : :::. ::. :.
NP_001 ---RWNFWKYLVNPEGQVVKFWKP-EEPIEVIRPDIAALVRQVIIKKKEDL
120 130 140 150
>>NP_001008398 (OMIM: 617172) probable glutathione perox (209 aa)
initn: 116 init1: 91 opt: 113 Z-score: 170.8 bits: 37.0 E(93482): 0.0098
Smith-Waterman score: 113; 33.3% identity (65.2% similar) in 66 aa overlap (1-65:136-194)
10 20 30
pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG
.: :: . :....: .... . : .
NP_001 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEP---
110 120 130 140 150 160
40 50 60
pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPL-VIEKDLPHYF
.::: :.:.. .: ::: . : :::. ::. :.
NP_001 ---RWNFWKYLVNPEGQVVKFWKP-EEPIEVIRPDIAALVRQVIIKKKEDL
170 180 190 200
>>XP_006714694 (OMIM: 617172) probable glutathione perox (210 aa)
initn: 116 init1: 91 opt: 113 Z-score: 170.7 bits: 37.0 E(93482): 0.0099
Smith-Waterman score: 113; 33.3% identity (65.2% similar) in 66 aa overlap (1-65:137-195)
10 20 30
pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG
.: :: . :....: .... . : .
XP_006 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEP---
110 120 130 140 150 160
40 50 60
pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPL-VIEKDLPHYF
.::: :.:.. .: ::: . : :::. ::. :.
XP_006 ---RWNFWKYLVNPEGQVVKFWKP-EEPIEVIRPDIAALVRQVIIKKKEDL
170 180 190 200 210
69 residues in 1 query sequences
65951994 residues in 93482 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Jun 30 14:55:32 2019 done: Sun Jun 30 14:55:33 2019
Total Scan time: 2.500 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]