Result of FASTA (ccds) for
pFN21AE2744
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2744, 215 aa
1>>>pF1KE2744 215 - 215 aa - 215 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4881+/-0.000733; mu= 12.9166+/- 0.044
mean_var=64.2296+/-12.743, 0's: 0 Z-trim(108.4): 18 B-trim: 6 in 1/51
Lambda= 0.160032
statistics sampled from 10340 (10353) to 10340 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.31), width: 16
Scan time: 0.960
The best scores are: opt bits E(33420)
CCDS3111.1 NMNAT3 gene_id:349565|Hs109|chr3 ( 215) 1456 344.4 3.3e-95
CCDS82846.1 NMNAT3 gene_id:349565|Hs109|chr3 ( 252) 1456 344.4 3.8e-95
CCDS87147.1 NMNAT3 gene_id:349565|Hs109|chr3 ( 346) 1456 344.5 5e-95
CCDS56282.1 NMNAT3 gene_id:349565|Hs109|chr3 ( 163) 849 204.2 4e-53
CCDS87145.1 NMNAT3 gene_id:349565|Hs109|chr3 ( 170) 611 149.3 1.4e-36
CCDS108.1 NMNAT1 gene_id:64802|Hs109|chr1 ( 279) 421 105.5 3.5e-23
CCDS72698.1 NMNAT1 gene_id:64802|Hs109|chr1 ( 160) 276 71.9 2.6e-13
CCDS1354.1 NMNAT2 gene_id:23057|Hs109|chr1 ( 302) 270 70.6 1.2e-12
CCDS1353.1 NMNAT2 gene_id:23057|Hs109|chr1 ( 307) 270 70.6 1.2e-12
>>CCDS3111.1 NMNAT3 gene_id:349565|Hs109|chr3 (215 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1823.0 bits: 344.4 E(33420): 3.3e-95
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KE2 MYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 EKFGLVCVGRVGHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EKFGLVCVGRVGHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKY
130 140 150 160 170 180
190 200 210
pF1KE2 LIPDAVITYIKDHGLYTKGSTWKGKSTQSTEGKTS
:::::::::::::::::::::::::::::::::::
CCDS31 LIPDAVITYIKDHGLYTKGSTWKGKSTQSTEGKTS
190 200 210
>>CCDS82846.1 NMNAT3 gene_id:349565|Hs109|chr3 (252 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1821.9 bits: 344.4 E(33420): 3.8e-95
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:38-252)
10 20 30
pF1KE2 MYQVIQGIISPVNDTYGKKDLAASHHRVAM
::::::::::::::::::::::::::::::
CCDS82 VLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAM
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE2 ARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE2 PELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGYIAESPILRMHQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGYIAESPILRMHQH
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE2 NIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYTKGSTWKGKSTQST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYTKGSTWKGKSTQST
190 200 210 220 230 240
pF1KE2 EGKTS
:::::
CCDS82 EGKTS
250
>>CCDS87147.1 NMNAT3 gene_id:349565|Hs109|chr3 (346 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1819.7 bits: 344.5 E(33420): 5e-95
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:132-346)
10 20 30
pF1KE2 MYQVIQGIISPVNDTYGKKDLAASHHRVAM
::::::::::::::::::::::::::::::
CCDS87 CKGTTLKKIIFIDSTWNQTNKIFTDERLQGMYQVIQGIISPVNDTYGKKDLAASHHRVAM
110 120 130 140 150 160
40 50 60 70 80 90
pF1KE2 ARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 ARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAV
170 180 190 200 210 220
100 110 120 130 140 150
pF1KE2 PELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGYIAESPILRMHQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 PELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGYIAESPILRMHQH
230 240 250 260 270 280
160 170 180 190 200 210
pF1KE2 NIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYTKGSTWKGKSTQST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 NIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYTKGSTWKGKSTQST
290 300 310 320 330 340
pF1KE2 EGKTS
:::::
CCDS87 EGKTS
>>CCDS56282.1 NMNAT3 gene_id:349565|Hs109|chr3 (163 aa)
initn: 849 init1: 849 opt: 849 Z-score: 1067.5 bits: 204.2 E(33420): 4e-53
Smith-Waterman score: 849; 100.0% identity (100.0% similar) in 127 aa overlap (89-215:37-163)
60 70 80 90 100 110
pF1KE2 VLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQE
::::::::::::::::::::::::::::::
CCDS56 VVLLACGSFNPITNMHLRMFEVARDHLHQTAVPELKLLCGADVLKTFQTPNLWKDAHIQE
10 20 30 40 50 60
120 130 140 150 160 170
pF1KE2 IVEKFGLVCVGRVGHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 IVEKFGLVCVGRVGHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSV
70 80 90 100 110 120
180 190 200 210
pF1KE2 KYLIPDAVITYIKDHGLYTKGSTWKGKSTQSTEGKTS
:::::::::::::::::::::::::::::::::::::
CCDS56 KYLIPDAVITYIKDHGLYTKGSTWKGKSTQSTEGKTS
130 140 150 160
>>CCDS87145.1 NMNAT3 gene_id:349565|Hs109|chr3 (170 aa)
initn: 611 init1: 611 opt: 611 Z-score: 770.2 bits: 149.3 E(33420): 1.4e-36
Smith-Waterman score: 611; 97.8% identity (100.0% similar) in 90 aa overlap (1-90:38-127)
10 20 30
pF1KE2 MYQVIQGIISPVNDTYGKKDLAASHHRVAM
::::::::::::::::::::::::::::::
CCDS87 VLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAM
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE2 ARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::..
CCDS87 ARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAGI
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE2 PELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGYIAESPILRMHQH
CCDS87 LKRILQTLFEHLTGTDSGLRLRTETASPSPHLKLETGYEWSCA
130 140 150 160 170
>>CCDS108.1 NMNAT1 gene_id:64802|Hs109|chr1 (279 aa)
initn: 694 init1: 414 opt: 421 Z-score: 529.8 bits: 105.5 E(33420): 3.5e-23
Smith-Waterman score: 660; 47.7% identity (70.2% similar) in 218 aa overlap (2-200:41-258)
10 20 30
pF1KE2 MYQVIQGIISPVNDTYGKKDLAASHHRVAMA
: :..::::::.:.: :: : ..::: ::
CCDS10 LLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMA
20 30 40 50 60 70
40 50 60 70
pF1KE2 RLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSP-------PQMEGP-------
.:: ..: :..:: ::: : .: ::.::::::. :: : : .: :
CCDS10 ELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWT
80 90 100 110 120 130
80 90 100 110 120 130
pF1KE2 -----DHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVG
.. :.: :::..:::::::.:..: .:::::. : .:: ..::.:: :.:
CCDS10 ETQDSSQKKSLEPKTKAVPKVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAG
140 150 160 170 180 190
140 150 160 170 180 190
pF1KE2 HDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKD
.: . .: :: .: :. :::...: . :.::.: ::::: .:::..::.:: : ::.
CCDS10 NDAQKFIYESDVLWKHRSNIHVVNEWIANDISSTKIRRALRRGQSIRYLVPDLVQEYIEK
200 210 220 230 240 250
200 210
pF1KE2 HGLYTKGSTWKGKSTQSTEGKTS
:.::.. :
CCDS10 HNLYSSESEDRNAGVILAPLQRNTAEAKT
260 270
>>CCDS72698.1 NMNAT1 gene_id:64802|Hs109|chr1 (160 aa)
initn: 276 init1: 276 opt: 276 Z-score: 352.6 bits: 71.9 E(33420): 2.6e-13
Smith-Waterman score: 276; 59.1% identity (80.3% similar) in 66 aa overlap (2-67:41-106)
10 20 30
pF1KE2 MYQVIQGIISPVNDTYGKKDLAASHHRVAMA
: :..::::::.:.: :: : ..::: ::
CCDS72 LLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMA
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE2 RLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVP
.:: ..: :..:: ::: : .: ::.::::::. ::
CCDS72 ELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWT
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE2 ELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGYIAESPILRMHQHN
CCDS72 ETQDSSQKKSLEPKTKDGVSLYHPGWSAVA
140 150 160
>>CCDS1354.1 NMNAT2 gene_id:23057|Hs109|chr1 (302 aa)
initn: 452 init1: 269 opt: 270 Z-score: 340.8 bits: 70.6 E(33420): 1.2e-12
Smith-Waterman score: 350; 32.9% identity (55.0% similar) in 240 aa overlap (2-175:36-275)
10 20 30
pF1KE2 MYQVIQGIISPVNDTYGKKDLAASHHRVAMA
. :: ::.:::.:.:::. :..:.::. :
CCDS13 LEEIQACQGLWEVFVTLSERARDYLHKTGRFIVIGGIVSPVHDSYGKQGLVSSRHRLIMC
10 20 30 40 50 60
40 50 60 70
pF1KE2 RLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLR----------SP--------PQ
.::.:.:::::::::: : :. : .::.::.. . : .: ::
CCDS13 QLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTPSMTPVIGQPQ
70 80 90 100 110 120
80 90
pF1KE2 MEGPD---HGKALFSTPAAV-----------------P----------------------
: :. ... . . :.:. :
CCDS13 NETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENANLGTVMRYEE
130 140 150 160 170 180
100 110 120 130 140
pF1KE2 -ELK--LLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGYIAESPILRMH
::. ::::.:.:..: :.::..: .. :: ::.: : : . : . .: ::: .
CCDS13 IELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRIMNHSSILRKY
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE2 QHNIHLAKEPVQNE---ISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYTKGSTWKGK
..:: ..:. ... .:.: : :: .:
CCDS13 KNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYLSQPVIDYILKSQLYINASG
250 260 270 280 290 300
>>CCDS1353.1 NMNAT2 gene_id:23057|Hs109|chr1 (307 aa)
initn: 452 init1: 269 opt: 270 Z-score: 340.7 bits: 70.6 E(33420): 1.2e-12
Smith-Waterman score: 350; 32.9% identity (55.0% similar) in 240 aa overlap (2-175:41-280)
10 20 30
pF1KE2 MYQVIQGIISPVNDTYGKKDLAASHHRVAMA
. :: ::.:::.:.:::. :..:.::. :
CCDS13 LLACGSFNPITKGHIQMFERARDYLHKTGRFIVIGGIVSPVHDSYGKQGLVSSRHRLIMC
20 30 40 50 60 70
40 50 60 70
pF1KE2 RLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLR----------SP--------PQ
.::.:.:::::::::: : :. : .::.::.. . : .: ::
CCDS13 QLAVQNSDWIRVDPWECYQDTWQTTCSVLEHHRDLMKRVTGCILSNVNTPSMTPVIGQPQ
80 90 100 110 120 130
80 90
pF1KE2 MEGPD---HGKALFSTPAAV-----------------P----------------------
: :. ... . . :.:. :
CCDS13 NETPQPIYQNSNVATKPTAAKILGKVGESLSRICCVRPPVERFTFVDENANLGTVMRYEE
140 150 160 170 180 190
100 110 120 130 140
pF1KE2 -ELK--LLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVGHDPKGYIAESPILRMH
::. ::::.:.:..: :.::..: .. :: ::.: : : . : . .: ::: .
CCDS13 IELRILLLCGSDLLESFCIPGLWNEADMEVIVGDFGIVVVPRDAADTDRIMNHSSILRKY
200 210 220 230 240 250
150 160 170 180 190 200
pF1KE2 QHNIHLAKEPVQNE---ISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYTKGSTWKGK
..:: ..:. ... .:.: : :: .:
CCDS13 KNNIMVVKDDINHPMSVVSSTKSRLALQHGDGHVVDYLSQPVIDYILKSQLYINASG
260 270 280 290 300
215 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Jun 19 14:29:04 2019 done: Wed Jun 19 14:29:05 2019
Total Scan time: 0.960 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]