FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2741, 359 aa
  1>>>pF1KE2741     359 - 359 aa - 359 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6302+/-0.000845; mu= 14.8625+/- 0.051
 mean_var=65.7960+/-13.178, 0's: 0 Z-trim(105.9): 8  B-trim: 0 in 0/49
 Lambda= 0.158116
 statistics sampled from 8792 (8793) to 8792 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.263), width:  16
 Scan time:  1.220

The best scores are:                                      opt bits E(33420)
CCDS6733.1 NANS gene_id:54187|Hs109|chr9           ( 359) 2414 559.5 1.7e-159


>>CCDS6733.1 NANS gene_id:54187|Hs109|chr9                (359 aa)
 initn: 2414 init1: 2414 opt: 2414  Z-score: 2977.3  bits: 559.5 E(33420): 1.7e-159
Smith-Waterman score: 2414; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KE2 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHDQYRELQRYAEEVGIFFTASGMDEMAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHDQYRELQRYAEEVGIFFTASGMDEMAVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEMACNEKLGKSVVAKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEMACNEKLGKSVVAKVK
              250       260       270       280       290       300

              310       320       330       340       350         
pF1KE2 IPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTIMEELVDNHGKKIKS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 IPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTIMEELVDNHGKKIKS
              310       320       330       340       350         




359 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Jun 19 14:23:44 2019 done: Wed Jun 19 14:23:45 2019
 Total Scan time:  1.220 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]