Result of FASTA (ccds) for
pFN21AE2725
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2725, 403 aa
1>>>pF1KE2725 403 - 403 aa - 403 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5111+/-0.000984; mu= 7.3532+/- 0.060
mean_var=343.4482+/-70.840, 0's: 0 Z-trim(115.5): 51 B-trim: 0 in 0/53
Lambda= 0.069206
statistics sampled from 16226 (16266) to 16226 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.487), width: 16
Scan time: 1.600
The best scores are: opt bits E(33420)
CCDS10928.1 MAF gene_id:4094|Hs109|chr16 ( 403) 2712 284.1 1.6e-76
CCDS42198.1 MAF gene_id:4094|Hs109|chr16 ( 373) 2506 263.5 2.4e-70
CCDS13311.1 MAFB gene_id:9935|Hs109|chr20 ( 323) 706 83.7 2.8e-16
CCDS34955.1 MAFA gene_id:389692|Hs109|chr8 ( 353) 615 74.7 1.6e-13
>>CCDS10928.1 MAF gene_id:4094|Hs109|chr16 (403 aa)
initn: 2712 init1: 2712 opt: 2712 Z-score: 1487.5 bits: 284.1 E(33420): 1.6e-76
Smith-Waterman score: 2712; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
310 320 330 340 350 360
370 380 390 400
pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
:::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
370 380 390 400
>>CCDS42198.1 MAF gene_id:4094|Hs109|chr16 (373 aa)
initn: 2804 init1: 2506 opt: 2506 Z-score: 1376.7 bits: 263.5 E(33420): 2.4e-70
Smith-Waterman score: 2506; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
310 320 330 340 350 360
370 380 390 400
pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
::::::::::::.
CCDS42 SSSDNPSSPEFFM
370
>>CCDS13311.1 MAFB gene_id:9935|Hs109|chr20 (323 aa)
initn: 1071 init1: 641 opt: 706 Z-score: 406.1 bits: 83.7 E(33420): 2.8e-16
Smith-Waterman score: 1125; 53.3% identity (71.1% similar) in 377 aa overlap (1-373:1-323)
10 20 30 40 50
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPV-ETDRIISQCGRLIAGGSLSSTP
::.::.:. .::::::::::::::::.::.:::::. ...: : :: .::.::::
CCDS13 MAAELSMG-PELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTP
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 MSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALIS
.:::::::: ::::: : .:::.:::: :::.. ::.:::::...:::::::::.
CCDS13 LSTPCSSVPSSPSFS-P-----TEQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE2 NSH---QLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSG
:: : .::.. :::.. . :.: .:..
CCDS13 -SHPVPQPLQSFDSF-RGAHHHHHHHHPHPHHAYPGAG-----------------VAHDE
120 130 140 150
180 190 200 210 220 230
pF1KE2 AGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG
::: : ::: ::: .. :..:.: : . .. : : :.:.. ..::.:.
CCDS13 LGPHAHPHHH-----HHHQASPPPSSAASPAQQLP-TSHPGPGPHATASATAAGGNGS--
160 170 180 190 200
240 250 260 270 280 290
pF1KE2 GGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTL
.:::::.:::.::::::::.::: .:.::::::::::::
CCDS13 --------------------VEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTL
210 220 230 240
300 310 320 330 340 350
pF1KE2 KNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGF
::::::::::.:::::.: ::.::.::.:::..::::.:::.::::::: : :::..:::
CCDS13 KNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLANSGF
250 260 270 280 290 300
360 370 380 390 400
pF1KE2 RENGSSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
:: ::.::.:::::::.
CCDS13 REAGSTSDSPSSPEFFL
310 320
>>CCDS34955.1 MAFA gene_id:389692|Hs109|chr8 (353 aa)
initn: 909 init1: 536 opt: 615 Z-score: 356.6 bits: 74.7 E(33420): 1.6e-13
Smith-Waterman score: 1049; 50.1% identity (63.9% similar) in 399 aa overlap (1-369:1-335)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
::.::::. ..::.::::.::::::::::::::::: :..:. : :: :::::::.
CCDS34 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
10 20 30 40 50
70 80 90
pF1KE2 STPCSSVPPSPSFSAPSPGSG----------SEQ--------------------KAHLED
:::::::: :::: :::::.: : : : :::
CCDS34 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE2 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
:::.:: ..::::::...:::::::::...:. :. : . : : : : : .
CCDS34 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE2 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
::....:: :. . :: :. :::::: ::::
CCDS34 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHH----------------
180 190 200
220 230 240 250 260 270
pF1KE2 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
::.: :::.: :: .....::::.:::.::
CCDS34 ------------HHHHHGGAGHGGGAG-----------HH----VRLEERFSDDQLVSMS
210 220 230
280 290 300 310 320 330
pF1KE2 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
:::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
CCDS34 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
240 250 260 270 280 290
340 350 360 370 380 390
pF1KE2 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFITEPTRKLEPSVGYATFW
: :..::..::: ::::::::.. : ..... : :
CCDS34 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
300 310 320 330 340 350
400
pF1KE2 KPQHRVLTSVFTK
403 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Oct 2 18:30:41 2018 done: Tue Oct 2 18:30:41 2018
Total Scan time: 1.600 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]