Result of FASTA (omim) for
pFN21AE2716
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2716, 235 aa
1>>>pF1KE2716 235 - 235 aa - 235 aa
Library: /omim/omim.rfq.tfa
63781504 residues in 89704 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4173+/-0.000285; mu= 9.3286+/- 0.018
mean_var=91.9254+/-18.474, 0's: 0 Z-trim(121.0): 10 B-trim: 1201 in 1/54
Lambda= 0.133769
statistics sampled from 37904 (37914) to 37904 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.423), width: 16
Scan time: 3.270
The best scores are: opt bits E(89704)
XP_016866808 (OMIM: 616805) PREDICTED: myc target ( 235) 1566 311.5 8.5e-85
XP_011534453 (OMIM: 616805) PREDICTED: myc target ( 235) 1566 311.5 8.5e-85
NP_079383 (OMIM: 616805) myc target protein 1 [Hom ( 235) 1566 311.5 8.5e-85
XP_011534454 (OMIM: 616805) PREDICTED: myc target ( 235) 1566 311.5 8.5e-85
XP_011534452 (OMIM: 616805) PREDICTED: myc target ( 235) 1566 311.5 8.5e-85
XP_011534451 (OMIM: 616805) PREDICTED: myc target ( 235) 1566 311.5 8.5e-85
>>XP_016866808 (OMIM: 616805) PREDICTED: myc target prot (235 aa)
initn: 1566 init1: 1566 opt: 1566 Z-score: 1643.8 bits: 311.5 E(89704): 8.5e-85
Smith-Waterman score: 1566; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE2 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
130 140 150 160 170 180
190 200 210 220 230
pF1KE2 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
190 200 210 220 230
>>XP_011534453 (OMIM: 616805) PREDICTED: myc target prot (235 aa)
initn: 1566 init1: 1566 opt: 1566 Z-score: 1643.8 bits: 311.5 E(89704): 8.5e-85
Smith-Waterman score: 1566; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE2 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
130 140 150 160 170 180
190 200 210 220 230
pF1KE2 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
190 200 210 220 230
>>NP_079383 (OMIM: 616805) myc target protein 1 [Homo sa (235 aa)
initn: 1566 init1: 1566 opt: 1566 Z-score: 1643.8 bits: 311.5 E(89704): 8.5e-85
Smith-Waterman score: 1566; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE2 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
130 140 150 160 170 180
190 200 210 220 230
pF1KE2 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
190 200 210 220 230
>>XP_011534454 (OMIM: 616805) PREDICTED: myc target prot (235 aa)
initn: 1566 init1: 1566 opt: 1566 Z-score: 1643.8 bits: 311.5 E(89704): 8.5e-85
Smith-Waterman score: 1566; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE2 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
130 140 150 160 170 180
190 200 210 220 230
pF1KE2 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
190 200 210 220 230
>>XP_011534452 (OMIM: 616805) PREDICTED: myc target prot (235 aa)
initn: 1566 init1: 1566 opt: 1566 Z-score: 1643.8 bits: 311.5 E(89704): 8.5e-85
Smith-Waterman score: 1566; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE2 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
130 140 150 160 170 180
190 200 210 220 230
pF1KE2 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
190 200 210 220 230
>>XP_011534451 (OMIM: 616805) PREDICTED: myc target prot (235 aa)
initn: 1566 init1: 1566 opt: 1566 Z-score: 1643.8 bits: 311.5 E(89704): 8.5e-85
Smith-Waterman score: 1566; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE2 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
130 140 150 160 170 180
190 200 210 220 230
pF1KE2 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
190 200 210 220 230
235 residues in 1 query sequences
63781504 residues in 89704 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Jan 30 11:05:52 2018 done: Tue Jan 30 11:05:52 2018
Total Scan time: 3.270 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]