FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2714, 221 aa
  1>>>pF1KE2714     221 - 221 aa - 221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0392+/-0.000744; mu= 4.2816+/- 0.046
 mean_var=176.5709+/-35.437, 0's: 0 Z-trim(115.7): 3  B-trim: 15 in 1/52
 Lambda= 0.096519
 statistics sampled from 16297 (16300) to 16297 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.501), width:  16
 Scan time:  1.040

The best scores are:                                      opt bits E(32554)
CCDS48022.1 MVB12B gene_id:89853|Hs108|chr9        ( 221) 1521 222.6 1.6e-58
CCDS35142.1 MVB12B gene_id:89853|Hs108|chr9        ( 319) 1521 222.7 2.1e-58


>>CCDS48022.1 MVB12B gene_id:89853|Hs108|chr9             (221 aa)
 initn: 1521 init1: 1521 opt: 1521  Z-score: 1164.2  bits: 222.6 E(32554): 1.6e-58
Smith-Waterman score: 1521; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE2 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG
              130       140       150       160       170       180

              190       200       210       220 
pF1KE2 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPR
       :::::::::::::::::::::::::::::::::::::::::
CCDS48 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPR
              190       200       210       220 

>>CCDS35142.1 MVB12B gene_id:89853|Hs108|chr9             (319 aa)
 initn: 1521 init1: 1521 opt: 1521  Z-score: 1161.9  bits: 222.7 E(32554): 2.1e-58
Smith-Waterman score: 1521; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE2 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG
              130       140       150       160       170       180

              190       200       210       220                    
pF1KE2 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPR                   
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS35 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPRHISLTLPATFRGRNSTRTD
              190       200       210       220       230       240

CCDS35 YEYQHSNLYAISAMDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQ
              250       260       270       280       290       300




221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Jan 30 11:05:29 2018 done: Tue Jan 30 11:05:29 2018
 Total Scan time:  1.040 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]