FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2713, 319 aa
  1>>>pF1KE2713     319 - 319 aa - 319 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0193+/-0.000803; mu= 6.1504+/- 0.049
 mean_var=171.0926+/-34.838, 0's: 0 Z-trim(114.7): 3  B-trim: 371 in 1/52
 Lambda= 0.098052
 statistics sampled from 15209 (15212) to 15209 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.467), width:  16
 Scan time:  1.400

The best scores are:                                      opt bits E(32554)
CCDS35142.1 MVB12B gene_id:89853|Hs108|chr9        ( 319) 2170 318.1 5.7e-87
CCDS48022.1 MVB12B gene_id:89853|Hs108|chr9        ( 221) 1521 226.2 1.8e-59
CCDS12359.1 MVB12A gene_id:93343|Hs108|chr19       ( 273)  545 88.2   8e-18


>>CCDS35142.1 MVB12B gene_id:89853|Hs108|chr9             (319 aa)
 initn: 2170 init1: 2170 opt: 2170  Z-score: 1674.9  bits: 318.1 E(32554): 5.7e-87
Smith-Waterman score: 2170; 100.0% identity (100.0% similar) in 319 aa overlap (1-319:1-319)

               10        20        30        40        50        60
pF1KE2 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPRHISLTLPATFRGRNSTRTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPRHISLTLPATFRGRNSTRTD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 YEYQHSNLYAISAMDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YEYQHSNLYAISAMDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQ
              250       260       270       280       290       300

              310         
pF1KE2 SAAARLPPSPTRCQQIPQS
       :::::::::::::::::::
CCDS35 SAAARLPPSPTRCQQIPQS
              310         

>>CCDS48022.1 MVB12B gene_id:89853|Hs108|chr9             (221 aa)
 initn: 1521 init1: 1521 opt: 1521  Z-score: 1181.0  bits: 226.2 E(32554): 1.8e-59
Smith-Waterman score: 1521; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE2 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPRHISLTLPATFRGRNSTRTD
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS48 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPR                   
              190       200       210       220                    

              250       260       270       280       290       300
pF1KE2 YEYQHSNLYAISAMDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQ

>>CCDS12359.1 MVB12A gene_id:93343|Hs108|chr19            (273 aa)
 initn: 481 init1: 198 opt: 545  Z-score: 433.5  bits: 88.2 E(32554): 8e-18
Smith-Waterman score: 545; 35.6% identity (68.0% similar) in 278 aa overlap (40-309:2-271)

      10        20        30        40        50        60         
pF1KE2 SRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRNRAPTGYDVV
                                     . .: :.  :..:..  ..    : :....
CCDS12                              MDPVPGTDSAPLAGLAWSSASAPPPRGFSAI
                                            10        20        30 

      70        80        90       100       110       120         
pF1KE2 AQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIKDTLPVGFIP
       . :..:. :.. :.  : .:   .::..   : :: .  ::..:....  :. ::.:: :
CCDS12 SCTVEGAPASFGKS--FAQKSGYFLCLSSLGSLENPQE-NVVADIQIVVDKSPLPLGFSP
              40          50        60         70        80        

     130       140       150       160       170       180         
pF1KE2 IQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIGELNSMGIWY
       . . .:..  . .:::.:.:..:  .:..:. :.:. :.:: .:  :  ::......:: 
CCDS12 VCDPMDSKASVSKKKRMCVKLLPLGATDTAVFDVRLSGKTKTVPG-YLRIGDMGGFAIWC
       90       100       110       120       130        140       

     190       200        210       220       230           240    
pF1KE2 RMGRVPRNHDSSQPTTPSQS-SAASTPAPNLPRHISLTLPATFR--GRNST--RTDYEYQ
       . ...::     .:   :.. .. :  : . : . .:   .. :  .: ::  :.:  :.
CCDS12 KKAKAPR--PVPKPRGLSRDMQGLSLDAASQPSKGGLLERTASRLGSRASTLRRNDSIYE
       150         160       170       180       190       200     

          250       260          270       280       290       300 
pF1KE2 HSNLYAISAMDGVPFMISEKF---SCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQS
        :.::.::::::::: .  .:   :: : ... :    .::::::.::.::.:.: .:..
CCDS12 ASSLYGISAMDGVPFTLHPRFEGKSCSPLAFSAFG--DLTIKSLADIEEEYNYGFVVEKT
         210       220       230       240         250       260   

             310         
pF1KE2 AAARLPPSPTRCQQIPQS
       ::::::::          
CCDS12 AAARLPPSVS        
           270           




319 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Jan 30 11:04:19 2018 done: Tue Jan 30 11:04:19 2018
 Total Scan time:  1.400 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]