FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2702, 429 aa
  1>>>pF1KE2702     429 - 429 aa - 429 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6015+/-0.00086; mu= 15.6531+/- 0.051
 mean_var=64.1547+/-12.570, 0's: 0 Z-trim(106.0): 8  B-trim: 0 in 0/50
 Lambda= 0.160125
 statistics sampled from 8722 (8725) to 8722 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.268), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS32836.1 FECH gene_id:2235|Hs108|chr18          ( 429) 2909 680.8  7e-196
CCDS11964.1 FECH gene_id:2235|Hs108|chr18          ( 423) 2849 666.9  1e-191


>>CCDS32836.1 FECH gene_id:2235|Hs108|chr18               (429 aa)
 initn: 2909 init1: 2909 opt: 2909  Z-score: 3630.2  bits: 680.8 E(32554): 7e-196
Smith-Waterman score: 2909; 100.0% identity (100.0% similar) in 429 aa overlap (1-429:1-429)

               10        20        30        40        50        60
pF1KE2 MRSLGANMAAALRAAGVLLRDPLASSSWRVCQPWRWKSGAAAAAVTTETAQHAQGAKPQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRSLGANMAAALRAAGVLLRDPLASSSWRVCQPWRWKSGAAAAAVTTETAQHAQGAKPQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QPQKRYESNIRKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QPQKRYESNIRKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 RTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 QCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 VLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRET
              370       380       390       400       410       420

                
pF1KE2 KSFFTSQQL
       :::::::::
CCDS32 KSFFTSQQL
                

>>CCDS11964.1 FECH gene_id:2235|Hs108|chr18               (423 aa)
 initn: 2441 init1: 2441 opt: 2849  Z-score: 3555.4  bits: 666.9 E(32554): 1e-191
Smith-Waterman score: 2849; 98.6% identity (98.6% similar) in 429 aa overlap (1-429:1-423)

               10        20        30        40        50        60
pF1KE2 MRSLGANMAAALRAAGVLLRDPLASSSWRVCQPWRWKSGAAAAAVTTETAQHAQGAKPQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MRSLGANMAAALRAAGVLLRDPLASSSWRVCQPWRWKSGAAAAAVTTETAQHAQGAKPQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QPQKRYESNIRKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKR
       :::::      :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QPQKR------KPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKR
                     70        80        90       100       110    

              130       140       150       160       170       180
pF1KE2 RTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAI
          120       130       140       150       160       170    

              190       200       210       220       230       240
pF1KE2 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLI
          180       190       200       210       220       230    

              250       260       270       280       290       300
pF1KE2 QCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYC
          240       250       260       270       280       290    

              310       320       330       340       350       360
pF1KE2 NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQ
          300       310       320       330       340       350    

              370       380       390       400       410       420
pF1KE2 VLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRET
          360       370       380       390       400       410    

                
pF1KE2 KSFFTSQQL
       :::::::::
CCDS11 KSFFTSQQL
          420   




429 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Sep 11 12:02:28 2017 done: Mon Sep 11 12:02:29 2017
 Total Scan time:  2.590 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]