FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2679, 90 aa
  1>>>pF1KE2679     90 - 90 aa - 90 aa
Library: /omim/omim.rfq.tfa
  61265892 residues in 86068 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6098+/-0.000272; mu= 11.3586+/- 0.017
 mean_var=45.6719+/- 8.963, 0's: 0 Z-trim(118.5): 13  B-trim: 111 in 1/54
 Lambda= 0.189780
 statistics sampled from 31721 (31734) to 31721 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.369), width:  16
 Scan time:  4.420

The best scores are:                                      opt bits E(86068)
NP_006542 (OMIM: 615061) secretoglobin family 1D m (  90)  581 165.5   1e-41
NP_006543 (OMIM: 615060) secretoglobin family 1D m (  90)  348 101.7 1.6e-22
NP_996881 (OMIM: 615062) secretoglobin family 1D m (  83)  316 93.0 6.6e-20
NP_003348 (OMIM: 192020) uteroglobin precursor [Ho (  91)  152 48.1 2.4e-06
NP_663626 (OMIM: 610176) secretoglobin family 1C m (  95)  127 41.2 0.00028
XP_005252861 (OMIM: 610176) PREDICTED: secretoglob ( 138)  127 41.3 0.00039


>>NP_006542 (OMIM: 615061) secretoglobin family 1D membe  (90 aa)
 initn: 581 init1: 581 opt: 581  Z-score: 870.0  bits: 165.5 E(86068): 1e-41
Smith-Waterman score: 581; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL
               10        20        30        40        50        60

               70        80        90
pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV
       ::::::::::::::::::::::::::::::
NP_006 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV
               70        80        90

>>NP_006543 (OMIM: 615060) secretoglobin family 1D membe  (90 aa)
 initn: 348 init1: 348 opt: 348  Z-score: 525.2  bits: 101.7 E(86068): 1.6e-22
Smith-Waterman score: 348; 60.2% identity (83.0% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL
       :.:::::::.:::::::.:::  : :: ::.  :.. ..:.::..:::: :: ::::::.
NP_006 MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM
               10        20        30        40        50        60

               70        80        90
pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV
        ::.:.: :. .:: ::...: :: .::  
NP_006 EVKKCVDTMAYEKRVLITKTLGKIAEKCDR
               70        80        90

>>NP_996881 (OMIM: 615062) secretoglobin family 1D membe  (83 aa)
 initn: 316 init1: 316 opt: 316  Z-score: 478.4  bits: 93.0 E(86068): 6.6e-20
Smith-Waterman score: 316; 60.8% identity (87.8% similar) in 74 aa overlap (1-74:1-74)

               10        20        30        40        50        60
pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL
       :.::::::.:.::::::::.:  :::..::.  :.:.:.   .:..::.. ::::.::::
NP_996 MRLSVCLLMVSLALCCYQAHALVCPAVASEITVFLFLSDAAVNLQVAKLNPPPEALAAKL
               10        20        30        40        50        60

               70        80        90
pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV
        ::.::::.:..::                
NP_996 EVKHCTDQISFKKRLSLKKSWWK       
               70        80          

>>NP_003348 (OMIM: 192020) uteroglobin precursor [Homo s  (91 aa)
 initn: 149 init1: 149 opt: 152  Z-score: 235.1  bits: 48.1 E(86068): 2.4e-06
Smith-Waterman score: 152; 31.8% identity (65.9% similar) in 85 aa overlap (1-84:1-84)

               10        20        30        40         50         
pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPL-FKLSLAKFDAPPEAVAAK
       :::.: : :::::::: .:.::.::.. ..... .... :  .. ..  :.   .   : 
NP_003 MKLAVTLTLVTLALCCSSASAEICPSF-QRVIETLLMDTPSSYEAAMELFSPDQDMREAG
               10        20         30        40        50         

      60        70        80        90 
pF1KE2 LGVKRCTDQMSLQKRSLIAEVLVKILKKCSV 
         .:. .: .  . :  : ... ::       
NP_003 AQLKKLVDTLPQKPRESIIKLMEKIAQSSLCN
      60        70        80        90 

>>NP_663626 (OMIM: 610176) secretoglobin family 1C membe  (95 aa)
 initn:  69 init1:  51 opt: 127  Z-score: 197.8  bits: 41.2 E(86068): 0.00028
Smith-Waterman score: 127; 30.3% identity (68.5% similar) in 89 aa overlap (1-85:1-89)

               10          20        30        40          50      
pF1KE2 MKLSVCLLLVTLAL-C-CYQANAEFCPALVSELLDFFFISEP--LFKLSLAKFDAPPEAV
       :: :  ::::.:.: : : .:..:    .  ..:. .... :  :.. .:.:...  .: 
NP_663 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
               10        20        30        40        50        60

         60        70        80        90 
pF1KE2 AAKLGVKRCTDQMSLQKRSLIAEVLVKILKKCSV 
       ::   .: : : .. .... ....::..:      
NP_663 AAMTELKSCIDGLQPMHKAELVKLLVQVLGSQDGA
               70        80        90     

>>XP_005252861 (OMIM: 610176) PREDICTED: secretoglobin f  (138 aa)
 initn:  60 init1:  51 opt: 127  Z-score: 195.3  bits: 41.3 E(86068): 0.00039
Smith-Waterman score: 127; 30.3% identity (68.5% similar) in 89 aa overlap (1-85:44-132)

                                             10          20        
pF1KE2                               MKLSVCLLLVTLAL-C-CYQANAEFCPALV
                                     :: :  ::::.:.: : : .:..:    . 
XP_005 ANPGCNQERCCPVRHKIPGFWLEAAPETAGMKGSRALLLVALTLFCICRMATGEDNDEFF
            20        30        40        50        60        70   

       30        40          50        60        70        80      
pF1KE2 SELLDFFFISEP--LFKLSLAKFDAPPEAVAAKLGVKRCTDQMSLQKRSLIAEVLVKILK
        ..:. .... :  :.. .:.:...  .: ::   .: : : .. .... ....::..: 
XP_005 MDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAMTELKSCIDGLQPMHKAELVKLLVQVLG
            80        90       100       110       120       130   

         90 
pF1KE2 KCSV 
            
XP_005 SQDGA
            




90 residues in 1 query   sequences
61265892 residues in 86068 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Feb 17 10:49:27 2017 done: Fri Feb 17 10:49:28 2017
 Total Scan time:  4.420 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]