Result of FASTA (ccds) for
pFN21AE2634
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2634, 1478 aa
1>>>pF1KE2634 1478 - 1478 aa - 1478 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.9570+/-0.00124; mu= -4.5157+/- 0.074
mean_var=496.3064+/-106.033, 0's: 0 Z-trim(112.2): 206 B-trim: 0 in 0/54
Lambda= 0.057570
statistics sampled from 12791 (12981) to 12791 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.399), width: 16
Scan time: 3.540
The best scores are: opt bits E(32554)
CCDS2734.1 FYCO1 gene_id:79443|Hs108|chr3 (1478) 9561 810.4 0
>>CCDS2734.1 FYCO1 gene_id:79443|Hs108|chr3 (1478 aa)
initn: 9561 init1: 9561 opt: 9561 Z-score: 4311.7 bits: 810.4 E(32554): 0
Smith-Waterman score: 9561; 100.0% identity (100.0% similar) in 1478 aa overlap (1-1478:1-1478)
10 20 30 40 50 60
pF1KE2 MASTNAESQLQRIIRDLQDAVTELSKEFQEAGEPITDDSTSLHKFSYKLEYLLQFDQKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MASTNAESQLQRIIRDLQDAVTELSKEFQEAGEPITDDSTSLHKFSYKLEYLLQFDQKEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ATLLGNKKDYWDYFCACLAKVKGANDGIRFVKSISELRTSLGKGRAFIRYSLVHQRLADT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 ATLLGNKKDYWDYFCACLAKVKGANDGIRFVKSISELRTSLGKGRAFIRYSLVHQRLADT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 LQQCFMNTKVTSDWYYARSPFLQPKLSSDIVGQLYELTEVQFDLASRGFDLDAAWPTFAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LQQCFMNTKVTSDWYYARSPFLQPKLSSDIVGQLYELTEVQFDLASRGFDLDAAWPTFAR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 RTLTTGSSAYLWKPPSRSSSMSSLVSSYLQTQEMVSNFDLNSPLNNEALEGFDEMRLELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RTLTTGSSAYLWKPPSRSSSMSSLVSSYLQTQEMVSNFDLNSPLNNEALEGFDEMRLELD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 QLEVREKQLRERMQQLDRENQELRAAVSQQGEQLQTERERGRTAAEDNVRLTCLVAELQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QLEVREKQLRERMQQLDRENQELRAAVSQQGEQLQTERERGRTAAEDNVRLTCLVAELQK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 QWEVTQATQNTVKELQTCLQGLELGAAEKEEDYHTALRRLESMLQPLAQELEATRDSLDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QWEVTQATQNTVKELQTCLQGLELGAAEKEEDYHTALRRLESMLQPLAQELEATRDSLDK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 KNQHLASFPGWLAMAQQKADTASDTKGRQEPIPSDAAQEMQELGEKLQALERERTKVEEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KNQHLASFPGWLAMAQQKADTASDTKGRQEPIPSDAAQEMQELGEKLQALERERTKVEEV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 NRQQSAQLEQLVKELQLKEDARASLERLVKEMAPLQEELSGKGQEADQLWRRLQELLAHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 NRQQSAQLEQLVKELQLKEDARASLERLVKEMAPLQEELSGKGQEADQLWRRLQELLAHT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 SSWEEELAELRREKKQQQEEKELLEQEVRSLTRQLQFLETQLAQVSQHVSDLEEQKKQLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 SSWEEELAELRREKKQQQEEKELLEQEVRSLTRQLQFLETQLAQVSQHVSDLEEQKKQLI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 QDKDHLSQQVGMLERLAGPPGPELPVAGEKNEALVPVNSSLQEAWGKPEEEQRGLQEAQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QDKDHLSQQVGMLERLAGPPGPELPVAGEKNEALVPVNSSLQEAWGKPEEEQRGLQEAQL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 DDTKVQEGSQEEELRQANRELEKELQNVVGRNQLLEGKLQALQADYQALQQRESAIQGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 DDTKVQEGSQEEELRQANRELEKELQNVVGRNQLLEGKLQALQADYQALQQRESAIQGSL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 ASLEAEQASIRHLGDQMEASLLAVRKAKEAMKAQMAEKEAILQSKEGECQQLREEVEQCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 ASLEAEQASIRHLGDQMEASLLAVRKAKEAMKAQMAEKEAILQSKEGECQQLREEVEQCQ
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 QLAEARHRELRALESQCQQQTQLIEVLTAEKGQQGVGPPTDNEARELAAQLALSQAQLEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QLAEARHRELRALESQCQQQTQLIEVLTAEKGQQGVGPPTDNEARELAAQLALSQAQLEV
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE2 HQGEVQRLQAQVVDLQAKMRAALDDQDKVQSQLSMAEAVLREHKTLVQQLKEQNEALNRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 HQGEVQRLQAQVVDLQAKMRAALDDQDKVQSQLSMAEAVLREHKTLVQQLKEQNEALNRA
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE2 HVQELLQCSEREGALQEERADEAQQREEELRALQEELSQAKCSSEEAQLEHAELQEQLHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 HVQELLQCSEREGALQEERADEAQQREEELRALQEELSQAKCSSEEAQLEHAELQEQLHR
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE2 ANTDTAELGIQVCALTVEKERVEEALACAVQELQDAKEAASREREGLERQVAGLQQEKES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 ANTDTAELGIQVCALTVEKERVEEALACAVQELQDAKEAASREREGLERQVAGLQQEKES
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE2 LQEKLKAAKAAAGSLPGLQAQLAQAEQRAQSLQEAAHQELNTLKFQLSAEIMDYQSRLKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LQEKLKAAKAAAGSLPGLQAQLAQAEQRAQSLQEAAHQELNTLKFQLSAEIMDYQSRLKN
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE2 AGEECKSLRGQLEEQGRQLQAAEEAVEKLKATQADMGEKLSCTSNHLAECQAAMLRKDKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 AGEECKSLRGQLEEQGRQLQAAEEAVEKLKATQADMGEKLSCTSNHLAECQAAMLRKDKE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE2 GAALREDLERTQKELEKATTKIQEYYNKLCQEVTNRERNDQKMLADLDDLNRTKKYLEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 GAALREDLERTQKELEKATTKIQEYYNKLCQEVTNRERNDQKMLADLDDLNRTKKYLEER
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE2 LIELLRDKDALWQKSDALEFQQKLSAEERWLGDTEANHCLDCKREFSWMVRRHHCRICGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LIELLRDKDALWQKSDALEFQQKLSAEERWLGDTEANHCLDCKREFSWMVRRHHCRICGR
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE2 IFCYYCCNNYVLSKHGGKKERCCRACFQKLSEGPGSPDSSGSGTSQGEPSPALSPASPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 IFCYYCCNNYVLSKHGGKKERCCRACFQKLSEGPGSPDSSGSGTSQGEPSPALSPASPGP
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE2 QATGGQGANTDYRPPDDAVFDIITDEELCQIQESGSSLPETPTETDSLDPNAAEQDTTST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QATGGQGANTDYRPPDDAVFDIITDEELCQIQESGSSLPETPTETDSLDPNAAEQDTTST
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE2 SLTPEDTEDMPVGQDSEICLLKSGELMIKVPLTVDEIASFGEGSRELFVRSSTYSLIPIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 SLTPEDTEDMPVGQDSEICLLKSGELMIKVPLTVDEIASFGEGSRELFVRSSTYSLIPIT
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KE2 VAEAGLTISWVFSSDPKSISFSVVFQEAEDTPLDQCKVLIPTTRCNSHKENIQGQLKVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VAEAGLTISWVFSSDPKSISFSVVFQEAEDTPLDQCKVLIPTTRCNSHKENIQGQLKVRT
1390 1400 1410 1420 1430 1440
1450 1460 1470
pF1KE2 PGIYMLIFDNTFSRFVSKKVFYHLTVDRPVIYDGSDFL
::::::::::::::::::::::::::::::::::::::
CCDS27 PGIYMLIFDNTFSRFVSKKVFYHLTVDRPVIYDGSDFL
1450 1460 1470
1478 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 17:32:51 2016 done: Tue Nov 8 17:32:51 2016
Total Scan time: 3.540 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]