Result of FASTA (ccds) for
pFN21AE2629
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2629, 950 aa
1>>>pF1KE2629 950 - 950 aa - 950 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6755+/-0.00071; mu= 20.3121+/- 0.043
mean_var=80.9054+/-16.159, 0's: 0 Z-trim(111.1): 13 B-trim: 106 in 1/50
Lambda= 0.142589
statistics sampled from 12103 (12112) to 12103 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.372), width: 16
Scan time: 5.420
The best scores are: opt bits E(32554)
CCDS53667.1 CARNS1 gene_id:57571|Hs108|chr11 ( 950) 6487 1344.3 0
CCDS44658.1 CARNS1 gene_id:57571|Hs108|chr11 ( 827) 5584 1158.5 0
>>CCDS53667.1 CARNS1 gene_id:57571|Hs108|chr11 (950 aa)
initn: 6487 init1: 6487 opt: 6487 Z-score: 7203.9 bits: 1344.3 E(32554): 0
Smith-Waterman score: 6487; 100.0% identity (100.0% similar) in 950 aa overlap (1-950:1-950)
10 20 30 40 50 60
pF1KE2 MLSLDPSGPEWDCPLGSKDLEEEGPWGGGSGLPPTGCFPGSWRQDVGLDCKGSPEGAEAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MLSLDPSGPEWDCPLGSKDLEEEGPWGGGSGLPPTGCFPGSWRQDVGLDCKGSPEGAEAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AWTVYYYSLLQSCLQQAGLPETQDRGQVPRTGCPGAEVTLCVLGSPSTFLPVLLEGGVQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AWTVYYYSLLQSCLQQAGLPETQDRGQVPRTGCPGAEVTLCVLGSPSTFLPVLLEGGVQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PGNMLLCLSPAWLMKVPAPGQPGEAALLVSKAVSFHPGGLTFLDDFVPPRRATYFLAGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PGNMLLCLSPAWLMKVPAPGQPGEAALLVSKAVSFHPGGLTFLDDFVPPRRATYFLAGLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LGPGRGREAAELARDLTCPTGASAELARLLEDRLLTRQLLAQQGGVAVPATLAFTYKPPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LGPGRGREAAELARDLTCPTGASAELARLLEDRLLTRQLLAQQGGVAVPATLAFTYKPPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 LLRGGDASLGLRLVELSGKEGQETLVKEEVEAFLRSEALGDILQVAVKLSGWRWRGRQAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LLRGGDASLGLRLVELSGKEGQETLVKEEVEAFLRSEALGDILQVAVKLSGWRWRGRQAW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 RLHPRAELGAVVDTVLALLEKLEEEESVLVEAVYPPAQLPCSDGPSPGPGLAVRICAVVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RLHPRAELGAVVDTVLALLEKLEEEESVLVEAVYPPAQLPCSDGPSPGPGLAVRICAVVC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 RTQGDRPLLSKVVCGVGRGDRPLRHHNSLPRTLEVALAQCGLGEEAQVAAVRQRVKAAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RTQGDRPLLSKVVCGVGRGDRPLRHHNSLPRTLEVALAQCGLGEEAQVAAVRQRVKAAAE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 AALAAVLALEAGLSAEQRGGRRAHTDFLGVDFALTAAGGVLTPVALELNGGLCLEACGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AALAAVLALEAGLSAEQRGGRRAHTDFLGVDFALTAAGGVLTPVALELNGGLCLEACGAL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 EGLWAAPRLGPAADEAVAAPLVETMLRRSARCLMEGKQLLVVGAGGVSKKFVWEAARDYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EGLWAAPRLGPAADEAVAAPLVETMLRRSARCLMEGKQLLVVGAGGVSKKFVWEAARDYG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 LQLHLVESDPNHFASQLVQTFIHFDMTEHRRDEENARLLAELVRARGLKLDGCFSYWDDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LQLHLVESDPNHFASQLVQTFIHFDMTEHRRDEENARLLAELVRARGLKLDGCFSYWDDC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 LVLTALLCQELGLPCSSPAAMRLAKQKSLTQLHLLHHHGPPWPAPSLHAVPCCPLESEAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LVLTALLCQELGLPCSSPAAMRLAKQKSLTQLHLLHHHGPPWPAPSLHAVPCCPLESEAD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 VERAVHQVPLPGVMKLEFGAGAVGVRLVEDAPQCHEHFSRITRDLQGEADHPGIGLGWGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VERAVHQVPLPGVMKLEFGAGAVGVRLVEDAPQCHEHFSRITRDLQGEADHPGIGLGWGN
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 AMLLMEFVEGTEHDVDLVLFGGRLLAAFVSDNGPTRLPGFTETAACMPTGLAPEQEAQMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AMLLMEFVEGTEHDVDLVLFGGRLLAAFVSDNGPTRLPGFTETAACMPTGLAPEQEAQMV
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE2 QAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEINPRMGGFYLRDWILELYGVDLLLAAVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEINPRMGGFYLRDWILELYGVDLLLAAVM
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE2 VACGLRPALPTRPRARGHLVGVMCLVSQHLQALSSTASRETLQALHDRGLLRLNLLEEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VACGLRPALPTRPRARGHLVGVMCLVSQHLQALSSTASRETLQALHDRGLLRLNLLEEAL
850 860 870 880 890 900
910 920 930 940 950
pF1KE2 VPGEYEEPYCSVACAGPSPTEARLRLLGLCQGLGIDGPSYPVAHFLSHFK
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VPGEYEEPYCSVACAGPSPTEARLRLLGLCQGLGIDGPSYPVAHFLSHFK
910 920 930 940 950
>>CCDS44658.1 CARNS1 gene_id:57571|Hs108|chr11 (827 aa)
initn: 5584 init1: 5584 opt: 5584 Z-score: 6200.8 bits: 1158.5 E(32554): 0
Smith-Waterman score: 5584; 100.0% identity (100.0% similar) in 827 aa overlap (124-950:1-827)
100 110 120 130 140 150
pF1KE2 PGAEVTLCVLGSPSTFLPVLLEGGVQSPGNMLLCLSPAWLMKVPAPGQPGEAALLVSKAV
::::::::::::::::::::::::::::::
CCDS44 MLLCLSPAWLMKVPAPGQPGEAALLVSKAV
10 20 30
160 170 180 190 200 210
pF1KE2 SFHPGGLTFLDDFVPPRRATYFLAGLGLGPGRGREAAELARDLTCPTGASAELARLLEDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SFHPGGLTFLDDFVPPRRATYFLAGLGLGPGRGREAAELARDLTCPTGASAELARLLEDR
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE2 LLTRQLLAQQGGVAVPATLAFTYKPPGLLRGGDASLGLRLVELSGKEGQETLVKEEVEAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLTRQLLAQQGGVAVPATLAFTYKPPGLLRGGDASLGLRLVELSGKEGQETLVKEEVEAF
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE2 LRSEALGDILQVAVKLSGWRWRGRQAWRLHPRAELGAVVDTVLALLEKLEEEESVLVEAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LRSEALGDILQVAVKLSGWRWRGRQAWRLHPRAELGAVVDTVLALLEKLEEEESVLVEAV
160 170 180 190 200 210
340 350 360 370 380 390
pF1KE2 YPPAQLPCSDGPSPGPGLAVRICAVVCRTQGDRPLLSKVVCGVGRGDRPLRHHNSLPRTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YPPAQLPCSDGPSPGPGLAVRICAVVCRTQGDRPLLSKVVCGVGRGDRPLRHHNSLPRTL
220 230 240 250 260 270
400 410 420 430 440 450
pF1KE2 EVALAQCGLGEEAQVAAVRQRVKAAAEAALAAVLALEAGLSAEQRGGRRAHTDFLGVDFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EVALAQCGLGEEAQVAAVRQRVKAAAEAALAAVLALEAGLSAEQRGGRRAHTDFLGVDFA
280 290 300 310 320 330
460 470 480 490 500 510
pF1KE2 LTAAGGVLTPVALELNGGLCLEACGALEGLWAAPRLGPAADEAVAAPLVETMLRRSARCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LTAAGGVLTPVALELNGGLCLEACGALEGLWAAPRLGPAADEAVAAPLVETMLRRSARCL
340 350 360 370 380 390
520 530 540 550 560 570
pF1KE2 MEGKQLLVVGAGGVSKKFVWEAARDYGLQLHLVESDPNHFASQLVQTFIHFDMTEHRRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEGKQLLVVGAGGVSKKFVWEAARDYGLQLHLVESDPNHFASQLVQTFIHFDMTEHRRDE
400 410 420 430 440 450
580 590 600 610 620 630
pF1KE2 ENARLLAELVRARGLKLDGCFSYWDDCLVLTALLCQELGLPCSSPAAMRLAKQKSLTQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ENARLLAELVRARGLKLDGCFSYWDDCLVLTALLCQELGLPCSSPAAMRLAKQKSLTQLH
460 470 480 490 500 510
640 650 660 670 680 690
pF1KE2 LLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVPLPGVMKLEFGAGAVGVRLVEDAPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVPLPGVMKLEFGAGAVGVRLVEDAPQ
520 530 540 550 560 570
700 710 720 730 740 750
pF1KE2 CHEHFSRITRDLQGEADHPGIGLGWGNAMLLMEFVEGTEHDVDLVLFGGRLLAAFVSDNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CHEHFSRITRDLQGEADHPGIGLGWGNAMLLMEFVEGTEHDVDLVLFGGRLLAAFVSDNG
580 590 600 610 620 630
760 770 780 790 800 810
pF1KE2 PTRLPGFTETAACMPTGLAPEQEAQMVQAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PTRLPGFTETAACMPTGLAPEQEAQMVQAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEI
640 650 660 670 680 690
820 830 840 850 860 870
pF1KE2 NPRMGGFYLRDWILELYGVDLLLAAVMVACGLRPALPTRPRARGHLVGVMCLVSQHLQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NPRMGGFYLRDWILELYGVDLLLAAVMVACGLRPALPTRPRARGHLVGVMCLVSQHLQAL
700 710 720 730 740 750
880 890 900 910 920 930
pF1KE2 SSTASRETLQALHDRGLLRLNLLEEALVPGEYEEPYCSVACAGPSPTEARLRLLGLCQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SSTASRETLQALHDRGLLRLNLLEEALVPGEYEEPYCSVACAGPSPTEARLRLLGLCQGL
760 770 780 790 800 810
940 950
pF1KE2 GIDGPSYPVAHFLSHFK
:::::::::::::::::
CCDS44 GIDGPSYPVAHFLSHFK
820
950 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:46:35 2016 done: Sat Nov 5 22:46:36 2016
Total Scan time: 5.420 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]