Result of FASTA (omim) for
pFN21AE2609
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2609, 265 aa
1>>>pF1KE2609 265 - 265 aa - 265 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3253+/-0.000441; mu= 9.4419+/- 0.027
mean_var=145.6622+/-30.732, 0's: 0 Z-trim(113.6): 198 B-trim: 649 in 1/56
Lambda= 0.106268
statistics sampled from 22814 (23082) to 22814 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.271), width: 16
Scan time: 4.310
The best scores are: opt bits E(85289)
XP_011525508 (OMIM: 109770) PREDICTED: carcinoembr ( 351) 1111 182.4 9.7e-46
NP_001171745 (OMIM: 109770) carcinoembryonic antig ( 368) 1111 182.4 1e-45
NP_001171742 (OMIM: 109770) carcinoembryonic antig ( 430) 1111 182.5 1.1e-45
NP_001171744 (OMIM: 109770) carcinoembryonic antig ( 461) 1111 182.6 1.2e-45
NP_001020083 (OMIM: 109770) carcinoembryonic antig ( 464) 1111 182.6 1.2e-45
NP_001192273 (OMIM: 109770) carcinoembryonic antig ( 468) 1111 182.6 1.2e-45
NP_001703 (OMIM: 109770) carcinoembryonic antigen- ( 526) 1111 182.6 1.3e-45
XP_011525292 (OMIM: 163980) PREDICTED: carcinoembr ( 324) 1065 175.3 1.2e-43
NP_002474 (OMIM: 163980) carcinoembryonic antigen- ( 344) 1065 175.4 1.3e-43
XP_005258470 (OMIM: 114890) PREDICTED: carcinoembr ( 524) 1064 175.4 1.9e-43
XP_011524624 (OMIM: 114890) PREDICTED: carcinoembr ( 524) 1064 175.4 1.9e-43
NP_001295327 (OMIM: 114890) carcinoembryonic antig ( 701) 1064 175.5 2.3e-43
XP_016881634 (OMIM: 114890) PREDICTED: carcinoembr ( 701) 1064 175.5 2.3e-43
NP_004354 (OMIM: 114890) carcinoembryonic antigen- ( 702) 1064 175.5 2.3e-43
NP_001278413 (OMIM: 114890) carcinoembryonic antig ( 702) 1064 175.5 2.3e-43
XP_016881635 (OMIM: 114890) PREDICTED: carcinoembr ( 617) 1060 174.9 3.2e-43
XP_016881685 (OMIM: 615747) PREDICTED: carcinoembr ( 331) 1056 174.0 3.2e-43
NP_001807 (OMIM: 615747) carcinoembryonic antigen- ( 349) 1056 174.0 3.3e-43
XP_016881684 (OMIM: 615747) PREDICTED: carcinoembr ( 349) 1056 174.0 3.3e-43
XP_016881683 (OMIM: 615747) PREDICTED: carcinoembr ( 368) 1056 174.0 3.4e-43
XP_016881687 (OMIM: 615747) PREDICTED: carcinoembr ( 255) 1053 173.4 3.7e-43
XP_011524644 (OMIM: 615747) PREDICTED: carcinoembr ( 255) 1053 173.4 3.7e-43
XP_011524643 (OMIM: 615747) PREDICTED: carcinoembr ( 255) 1053 173.4 3.7e-43
XP_011524642 (OMIM: 615747) PREDICTED: carcinoembr ( 415) 1056 174.1 3.7e-43
XP_016882492 (OMIM: 176394) PREDICTED: pregnancy-s ( 335) 823 138.2 1.8e-32
NP_001123486 (OMIM: 176394) pregnancy-specific bet ( 335) 823 138.2 1.8e-32
NP_002772 (OMIM: 176394) pregnancy-specific beta-1 ( 335) 823 138.2 1.8e-32
NP_001317453 (OMIM: 176390) pregnancy-specific bet ( 326) 815 137.0 4.2e-32
XP_005259122 (OMIM: 176390) PREDICTED: pregnancy-s ( 333) 815 137.0 4.3e-32
XP_011525427 (OMIM: 176390) PREDICTED: pregnancy-s ( 333) 810 136.3 7.3e-32
XP_011525288 (OMIM: 176397) PREDICTED: pregnancy-s ( 326) 806 135.6 1.1e-31
NP_001288637 (OMIM: 176398) pregnancy-specific bet ( 333) 803 135.2 1.5e-31
XP_005259132 (OMIM: 176398) PREDICTED: pregnancy-s ( 402) 803 135.3 1.7e-31
NP_002775 (OMIM: 176398) pregnancy-specific beta-1 ( 426) 803 135.3 1.8e-31
XP_016882496 (OMIM: 176398) PREDICTED: pregnancy-s ( 436) 803 135.3 1.8e-31
XP_016882493 (OMIM: 176398) PREDICTED: pregnancy-s ( 495) 803 135.4 2e-31
NP_001027020 (OMIM: 176395) pregnancy-specific bet ( 424) 799 134.7 2.8e-31
NP_002773 (OMIM: 176395) pregnancy-specific beta-1 ( 435) 799 134.7 2.8e-31
NP_001263424 (OMIM: 176393) pregnancy-specific bet ( 326) 797 134.2 2.9e-31
XP_016882490 (OMIM: 176393) PREDICTED: pregnancy-s ( 333) 797 134.3 2.9e-31
XP_011525429 (OMIM: 176392) PREDICTED: pregnancy-s ( 272) 794 133.7 3.5e-31
NP_002776 (OMIM: 176401) pregnancy-specific beta-1 ( 335) 793 133.6 4.4e-31
NP_112536 (OMIM: 176391) pregnancy-specific beta-1 ( 335) 792 133.5 4.9e-31
NP_998798 (OMIM: 176393) pregnancy-specific beta-1 ( 326) 791 133.3 5.4e-31
XP_016882491 (OMIM: 176393) PREDICTED: pregnancy-s ( 333) 791 133.3 5.5e-31
XP_011525428 (OMIM: 176392) PREDICTED: pregnancy-s ( 357) 790 133.2 6.4e-31
NP_001288636 (OMIM: 176398) pregnancy-specific bet ( 333) 789 133.0 6.8e-31
XP_016882494 (OMIM: 176398) PREDICTED: pregnancy-s ( 402) 789 133.1 7.7e-31
XP_016882487 (OMIM: 176393) PREDICTED: pregnancy-s ( 349) 737 125.1 1.8e-28
XP_016882489 (OMIM: 176393) PREDICTED: pregnancy-s ( 342) 731 124.2 3.3e-28
>>XP_011525508 (OMIM: 109770) PREDICTED: carcinoembryoni (351 aa)
initn: 1140 init1: 742 opt: 1111 Z-score: 942.2 bits: 182.4 E(85289): 9.7e-46
Smith-Waterman score: 1111; 69.9% identity (88.6% similar) in 236 aa overlap (1-236:1-235)
10 20 30 40 50 60
pF1KE2 MGSPSACPYRVCIPWQGLLLTASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQ
:: :: .:: .:::::::::::::::: :..:: . . .::::::::::::.::: :
XP_011 MGHLSAPLHRVRVPWQGLLLTASLLTFWNPPTTAQLTTESMPFNVAEGKEVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGI
.:.::.::::::: .: .:.::. . .:. .::::..::::::::..:::::::.::.:.
XP_011 QLFGYSWYKGERVDGNRQIVGYAIG-TQQATPGPANSGRETIYPNASLLIQNVTQNDTGF
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 YTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWW
:::.::: .:::::.: ::.:. : :::::.::: ::::.:: :..::.::::.::::::
XP_011 YTLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPETQDTTYLWW
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 VNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQ
.::::: ::::: ::. ::::.:::.:.:: :::::::::::.:.::::::::: :
XP_011 INNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNVTYGPDT
180 190 200 210 220 230
250 260
pF1KE2 ASSPDLSAGTAVSIMIGVLAGMALI
XP_011 PTISPSDTYYRPGANLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTC
240 250 260 270 280 290
>>NP_001171745 (OMIM: 109770) carcinoembryonic antigen-r (368 aa)
initn: 1184 init1: 742 opt: 1111 Z-score: 941.9 bits: 182.4 E(85289): 1e-45
Smith-Waterman score: 1111; 69.9% identity (88.6% similar) in 236 aa overlap (1-236:1-235)
10 20 30 40 50 60
pF1KE2 MGSPSACPYRVCIPWQGLLLTASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQ
:: :: .:: .:::::::::::::::: :..:: . . .::::::::::::.::: :
NP_001 MGHLSAPLHRVRVPWQGLLLTASLLTFWNPPTTAQLTTESMPFNVAEGKEVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGI
.:.::.::::::: .: .:.::. . .:. .::::..::::::::..:::::::.::.:.
NP_001 QLFGYSWYKGERVDGNRQIVGYAIG-TQQATPGPANSGRETIYPNASLLIQNVTQNDTGF
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 YTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWW
:::.::: .:::::.: ::.:. : :::::.::: ::::.:: :..::.::::.::::::
NP_001 YTLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPETQDTTYLWW
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 VNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQ
.::::: ::::: ::. ::::.:::.:.:: :::::::::::.:.::::::::: :
NP_001 INNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNVTYGPDT
180 190 200 210 220 230
250 260
pF1KE2 ASSPDLSAGTAVSIMIGVLAGMALI
NP_001 PTISPSDTYYRPGANLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTC
240 250 260 270 280 290
>>NP_001171742 (OMIM: 109770) carcinoembryonic antigen-r (430 aa)
initn: 1184 init1: 742 opt: 1111 Z-score: 941.1 bits: 182.5 E(85289): 1.1e-45
Smith-Waterman score: 1111; 69.9% identity (88.6% similar) in 236 aa overlap (1-236:1-235)
10 20 30 40 50 60
pF1KE2 MGSPSACPYRVCIPWQGLLLTASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQ
:: :: .:: .:::::::::::::::: :..:: . . .::::::::::::.::: :
NP_001 MGHLSAPLHRVRVPWQGLLLTASLLTFWNPPTTAQLTTESMPFNVAEGKEVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGI
.:.::.::::::: .: .:.::. . .:. .::::..::::::::..:::::::.::.:.
NP_001 QLFGYSWYKGERVDGNRQIVGYAIG-TQQATPGPANSGRETIYPNASLLIQNVTQNDTGF
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 YTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWW
:::.::: .:::::.: ::.:. : :::::.::: ::::.:: :..::.::::.::::::
NP_001 YTLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPETQDTTYLWW
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 VNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQ
.::::: ::::: ::. ::::.:::.:.:: :::::::::::.:.::::::::: :
NP_001 INNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNVTYGPDT
180 190 200 210 220 230
250 260
pF1KE2 ASSPDLSAGTAVSIMIGVLAGMALI
NP_001 PTISPSDTYYRPGANLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTC
240 250 260 270 280 290
>>NP_001171744 (OMIM: 109770) carcinoembryonic antigen-r (461 aa)
initn: 1184 init1: 742 opt: 1111 Z-score: 940.8 bits: 182.6 E(85289): 1.2e-45
Smith-Waterman score: 1111; 69.9% identity (88.6% similar) in 236 aa overlap (1-236:1-235)
10 20 30 40 50 60
pF1KE2 MGSPSACPYRVCIPWQGLLLTASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQ
:: :: .:: .:::::::::::::::: :..:: . . .::::::::::::.::: :
NP_001 MGHLSAPLHRVRVPWQGLLLTASLLTFWNPPTTAQLTTESMPFNVAEGKEVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGI
.:.::.::::::: .: .:.::. . .:. .::::..::::::::..:::::::.::.:.
NP_001 QLFGYSWYKGERVDGNRQIVGYAIG-TQQATPGPANSGRETIYPNASLLIQNVTQNDTGF
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 YTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWW
:::.::: .:::::.: ::.:. : :::::.::: ::::.:: :..::.::::.::::::
NP_001 YTLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPETQDTTYLWW
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 VNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQ
.::::: ::::: ::. ::::.:::.:.:: :::::::::::.:.::::::::: :
NP_001 INNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNVTYGPDT
180 190 200 210 220 230
250 260
pF1KE2 ASSPDLSAGTAVSIMIGVLAGMALI
NP_001 PTISPSDTYYRPGANLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTC
240 250 260 270 280 290
>>NP_001020083 (OMIM: 109770) carcinoembryonic antigen-r (464 aa)
initn: 1393 init1: 742 opt: 1111 Z-score: 940.7 bits: 182.6 E(85289): 1.2e-45
Smith-Waterman score: 1111; 69.9% identity (88.6% similar) in 236 aa overlap (1-236:1-235)
10 20 30 40 50 60
pF1KE2 MGSPSACPYRVCIPWQGLLLTASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQ
:: :: .:: .:::::::::::::::: :..:: . . .::::::::::::.::: :
NP_001 MGHLSAPLHRVRVPWQGLLLTASLLTFWNPPTTAQLTTESMPFNVAEGKEVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGI
.:.::.::::::: .: .:.::. . .:. .::::..::::::::..:::::::.::.:.
NP_001 QLFGYSWYKGERVDGNRQIVGYAIG-TQQATPGPANSGRETIYPNASLLIQNVTQNDTGF
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 YTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWW
:::.::: .:::::.: ::.:. : :::::.::: ::::.:: :..::.::::.::::::
NP_001 YTLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPETQDTTYLWW
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 VNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQ
.::::: ::::: ::. ::::.:::.:.:: :::::::::::.:.::::::::: :
NP_001 INNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNVTYGPDT
180 190 200 210 220 230
250 260
pF1KE2 ASSPDLSAGTAVSIMIGVLAGMALI
NP_001 PTISPSDTYYRPGANLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTC
240 250 260 270 280 290
>--
initn: 355 init1: 223 opt: 303 Z-score: 271.2 bits: 58.7 E(85289): 2.3e-08
Smith-Waterman score: 303; 35.8% identity (64.2% similar) in 162 aa overlap (108-265:284-444)
80 90 100 110 120 130
pF1KE2 RIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGIYTLHVIKENLVNEEVTR
:.: :.: :..: :: :. . ...:
NP_001 NLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTCHANNSVTGCNRTTV
260 270 280 290 300 310
140 150 160 170 180 190
pF1KE2 QFYVFSE-PP---KPSITSNNFNPVENKDIVVLTCQPETQNTTYLWWVNNQSLLVSPRLL
. . .: : ::.: ... . . .:: : :::. . . . :. .:::: : :.
NP_001 KTIIVTELSPVVAKPQIKASKTTVTGDKDSVNLTCSTNDTGISIRWFFKNQSLPSSERMK
320 330 340 350 360 370
200 210 220 230 240 250
pF1KE2 LSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQASSPDLSAGTAVS
:: : :: . . ..: : : ::. ::.. ..:::. ::: :... . :: :. ..
NP_001 LSQGNTTLSINPVKREDAGTYWCEVFNPISKNQSDPIMLNVNYNALPQEN-GLSPGAIAG
380 390 400 410 420 430
260
pF1KE2 IMIGVLAGMALI
:.:::.: .:::
NP_001 IVIGVVALVALIAVALACFLHFGKTGSSGPLQ
440 450 460
>>NP_001192273 (OMIM: 109770) carcinoembryonic antigen-r (468 aa)
initn: 1393 init1: 742 opt: 1111 Z-score: 940.7 bits: 182.6 E(85289): 1.2e-45
Smith-Waterman score: 1111; 69.9% identity (88.6% similar) in 236 aa overlap (1-236:1-235)
10 20 30 40 50 60
pF1KE2 MGSPSACPYRVCIPWQGLLLTASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQ
:: :: .:: .:::::::::::::::: :..:: . . .::::::::::::.::: :
NP_001 MGHLSAPLHRVRVPWQGLLLTASLLTFWNPPTTAQLTTESMPFNVAEGKEVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGI
.:.::.::::::: .: .:.::. . .:. .::::..::::::::..:::::::.::.:.
NP_001 QLFGYSWYKGERVDGNRQIVGYAIG-TQQATPGPANSGRETIYPNASLLIQNVTQNDTGF
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 YTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWW
:::.::: .:::::.: ::.:. : :::::.::: ::::.:: :..::.::::.::::::
NP_001 YTLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPETQDTTYLWW
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 VNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQ
.::::: ::::: ::. ::::.:::.:.:: :::::::::::.:.::::::::: :
NP_001 INNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNVTYGPDT
180 190 200 210 220 230
250 260
pF1KE2 ASSPDLSAGTAVSIMIGVLAGMALI
NP_001 PTISPSDTYYRPGANLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTC
240 250 260 270 280 290
>--
initn: 355 init1: 223 opt: 303 Z-score: 271.2 bits: 58.7 E(85289): 2.3e-08
Smith-Waterman score: 303; 35.8% identity (64.2% similar) in 162 aa overlap (108-265:284-444)
80 90 100 110 120 130
pF1KE2 RIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGIYTLHVIKENLVNEEVTR
:.: :.: :..: :: :. . ...:
NP_001 NLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTCHANNSVTGCNRTTV
260 270 280 290 300 310
140 150 160 170 180 190
pF1KE2 QFYVFSE-PP---KPSITSNNFNPVENKDIVVLTCQPETQNTTYLWWVNNQSLLVSPRLL
. . .: : ::.: ... . . .:: : :::. . . . :. .:::: : :.
NP_001 KTIIVTELSPVVAKPQIKASKTTVTGDKDSVNLTCSTNDTGISIRWFFKNQSLPSSERMK
320 330 340 350 360 370
200 210 220 230 240 250
pF1KE2 LSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQASSPDLSAGTAVS
:: : :: . . ..: : : ::. ::.. ..:::. ::: :... . :: :. ..
NP_001 LSQGNTTLSINPVKREDAGTYWCEVFNPISKNQSDPIMLNVNYNALPQEN-GLSPGAIAG
380 390 400 410 420 430
260
pF1KE2 IMIGVLAGMALI
:.:::.: .:::
NP_001 IVIGVVALVALIAVALACFLHFGKTGRTTPMTHLTR
440 450 460
>>NP_001703 (OMIM: 109770) carcinoembryonic antigen-rela (526 aa)
initn: 1393 init1: 742 opt: 1111 Z-score: 940.1 bits: 182.6 E(85289): 1.3e-45
Smith-Waterman score: 1111; 69.9% identity (88.6% similar) in 236 aa overlap (1-236:1-235)
10 20 30 40 50 60
pF1KE2 MGSPSACPYRVCIPWQGLLLTASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQ
:: :: .:: .:::::::::::::::: :..:: . . .::::::::::::.::: :
NP_001 MGHLSAPLHRVRVPWQGLLLTASLLTFWNPPTTAQLTTESMPFNVAEGKEVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGI
.:.::.::::::: .: .:.::. . .:. .::::..::::::::..:::::::.::.:.
NP_001 QLFGYSWYKGERVDGNRQIVGYAIG-TQQATPGPANSGRETIYPNASLLIQNVTQNDTGF
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 YTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWW
:::.::: .:::::.: ::.:. : :::::.::: ::::.:: :..::.::::.::::::
NP_001 YTLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPETQDTTYLWW
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 VNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQ
.::::: ::::: ::. ::::.:::.:.:: :::::::::::.:.::::::::: :
NP_001 INNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNVTYGPDT
180 190 200 210 220 230
250 260
pF1KE2 ASSPDLSAGTAVSIMIGVLAGMALI
NP_001 PTISPSDTYYRPGANLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTC
240 250 260 270 280 290
>--
initn: 339 init1: 223 opt: 303 Z-score: 270.6 bits: 58.7 E(85289): 2.5e-08
Smith-Waterman score: 303; 35.8% identity (64.2% similar) in 162 aa overlap (108-265:284-444)
80 90 100 110 120 130
pF1KE2 RIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGIYTLHVIKENLVNEEVTR
:.: :.: :..: :: :. . ...:
NP_001 NLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTCHANNSVTGCNRTTV
260 270 280 290 300 310
140 150 160 170 180 190
pF1KE2 QFYVFSE-PP---KPSITSNNFNPVENKDIVVLTCQPETQNTTYLWWVNNQSLLVSPRLL
. . .: : ::.: ... . . .:: : :::. . . . :. .:::: : :.
NP_001 KTIIVTELSPVVAKPQIKASKTTVTGDKDSVNLTCSTNDTGISIRWFFKNQSLPSSERMK
320 330 340 350 360 370
200 210 220 230 240 250
pF1KE2 LSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQASSPDLSAGTAVS
:: : :: . . ..: : : ::. ::.. ..:::. ::: :... . :: :. ..
NP_001 LSQGNTTLSINPVKREDAGTYWCEVFNPISKNQSDPIMLNVNYNALPQEN-GLSPGAIAG
380 390 400 410 420 430
260
pF1KE2 IMIGVLAGMALI
:.:::.: .:::
NP_001 IVIGVVALVALIAVALACFLHFGKTGRASDQRDLTEHKPSVSNHTQDHSNDPPNKMNEVT
440 450 460 470 480 490
>>XP_011525292 (OMIM: 163980) PREDICTED: carcinoembryoni (324 aa)
initn: 1090 init1: 704 opt: 1065 Z-score: 904.5 bits: 175.3 E(85289): 1.2e-43
Smith-Waterman score: 1065; 66.1% identity (85.3% similar) in 245 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KE2 MGSPSACPYRVCIPWQGLLLTASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQ
:: ::: : :. .::. .::::::::::: :..:. .:. .::::::::::::..:: :
XP_011 MGPPSAPPCRLHVPWKEVLLTASLLTFWNPPTTAKLTIESTPFNVAEGKEVLLLAHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGI
: ::.::::::: .: :.::: . .:. .::::..::::::::..:::::::.::.:.
XP_011 NRIGYSWYKGERVDGNSLIVGYVIG-TQQATPGPAYSGRETIYPNASLLIQNVTQNDTGF
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 YTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWW
:::.::: .:::::.: ::.:. : :::::.::: ::::.:: :..::.::.::::::::
XP_011 YTLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPEVQNTTYLWW
120 130 140 150 160 170
190 200 210 220 230
pF1KE2 VNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRY-ESV
::.::: ::::: ::. : ::.:::. .:: : ::::::::..:.::::::::: : .:
XP_011 VNGQSLPVSPRLQLSNGNMTLTLLSVKRNDAGSYECEIQNPASANRSDPVTLNVLYGPDV
180 190 200 210 220 230
240 250 260
pF1KE2 QASSPDLSAGTAVSIMIGVLAGMALI
. ::
XP_011 PTISPSKANYRPGENLNLSCHAASNPPAQYSWFINGTFQQSTQELFIPNITVNNSGSYMC
240 250 260 270 280 290
>>NP_002474 (OMIM: 163980) carcinoembryonic antigen-rela (344 aa)
initn: 1156 init1: 704 opt: 1065 Z-score: 904.2 bits: 175.4 E(85289): 1.3e-43
Smith-Waterman score: 1065; 66.1% identity (85.3% similar) in 245 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KE2 MGSPSACPYRVCIPWQGLLLTASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQ
:: ::: : :. .::. .::::::::::: :..:. .:. .::::::::::::..:: :
NP_002 MGPPSAPPCRLHVPWKEVLLTASLLTFWNPPTTAKLTIESTPFNVAEGKEVLLLAHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGI
: ::.::::::: .: :.::: . .:. .::::..::::::::..:::::::.::.:.
NP_002 NRIGYSWYKGERVDGNSLIVGYVIG-TQQATPGPAYSGRETIYPNASLLIQNVTQNDTGF
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 YTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWW
:::.::: .:::::.: ::.:. : :::::.::: ::::.:: :..::.::.::::::::
NP_002 YTLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPEVQNTTYLWW
120 130 140 150 160 170
190 200 210 220 230
pF1KE2 VNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRY-ESV
::.::: ::::: ::. : ::.:::. .:: : ::::::::..:.::::::::: : .:
NP_002 VNGQSLPVSPRLQLSNGNMTLTLLSVKRNDAGSYECEIQNPASANRSDPVTLNVLYGPDV
180 190 200 210 220 230
240 250 260
pF1KE2 QASSPDLSAGTAVSIMIGVLAGMALI
. ::
NP_002 PTISPSKANYRPGENLNLSCHAASNPPAQYSWFINGTFQQSTQELFIPNITVNNSGSYMC
240 250 260 270 280 290
>>XP_005258470 (OMIM: 114890) PREDICTED: carcinoembryoni (524 aa)
initn: 1545 init1: 666 opt: 1064 Z-score: 901.1 bits: 175.4 E(85289): 1.9e-43
Smith-Waterman score: 1064; 66.9% identity (86.0% similar) in 236 aa overlap (1-236:1-235)
10 20 30 40 50 60
pF1KE2 MGSPSACPYRVCIPWQGLLLTASLLTFWNLPNSAQTNIDVVPFNVAEGKEVLLVVHNESQ
: :::: :.: ::::: :::::::::::: :..:. .:. .::::::::::::.::: :
XP_005 MESPSAPPHRWCIPWQRLLLTASLLTFWNPPTTAKLTIESTPFNVAEGKEVLLLVHNLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETIYPNGTLLIQNVTHNDAGI
.:.::.::::::: .: .::::: . .:. .::::..::: ::::..:::::. .::.:.
XP_005 HLFGYSWYKGERVDGNRQIIGYVIG-TQQATPGPAYSGREIIYPNASLLIQNIIQNDTGF
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 YTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFNPVENKDIVVLTCQPETQNTTYLWW
::::::: .:::::.: :: :. : :::::.::: .:::.:: :..::.::::..:::::
XP_005 YTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWW
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 VNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYECEIQNPVGASRSDPVTLNVRYESVQ
:::::: ::::: ::. ::::.:...:.:: . :.:: ::::.: ::: : ::: :
XP_005 VNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDA
180 190 200 210 220 230
250 260
pF1KE2 ASSPDLSAGTAVSIMIGVLAGMALI
XP_005 PTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTC
240 250 260 270 280 290
>--
initn: 520 init1: 471 opt: 524 Z-score: 453.7 bits: 92.6 E(85289): 1.6e-18
Smith-Waterman score: 524; 51.7% identity (75.0% similar) in 172 aa overlap (73-236:245-413)
50 60 70 80 90 100
pF1KE2 FNVAEGKEVLLVVHNESQNLYGYNWYKGERVHANYRIIGYVKNISQENAPGPAHNGRETI
....:: : :.: . : .: .. .
XP_005 CETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRS-GENLNLSCHAASNPP--AQYSW
220 230 240 250 260 270
110 120 130 140 150
pF1KE2 YPNGT-------LLIQNVTHNDAGIYTLHVIKENL-VNEEVTRQFYVFSEPPKPSITSNN
. ::: :.: :.: :..: :: .. . . .:. .. . :..::::: :::::
XP_005 FVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNN
280 290 300 310 320 330
160 170 180 190 200 210
pF1KE2 FNPVENKDIVVLTCQPETQNTTYLWWVNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPY
::::..: :.:::.:: :::::::::::::: ::::: ::.:::::.:::.:.::.:::
XP_005 SNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPY
340 350 360 370 380 390
220 230 240 250 260
pF1KE2 ECEIQNPVGASRSDPVTLNVRYESVQASSPDLSAGTAVSIMIGVLAGMALI
:: ::: .....:::: ::: :
XP_005 ECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI
400 410 420 430 440 450
265 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 17:01:04 2016 done: Tue Nov 8 17:01:05 2016
Total Scan time: 4.310 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]