FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2608, 349 aa
  1>>>pF1KE2608 349 - 349 aa - 349 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2566+/-0.000712; mu= 14.1909+/- 0.043
 mean_var=126.2101+/-24.172, 0's: 0 Z-trim(114.2): 3  B-trim: 0 in 0/51
 Lambda= 0.114163
 statistics sampled from 14802 (14804) to 14802 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.455), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS135.1 DRAXIN gene_id:374946|Hs108|chr1         ( 349) 2434 411.4 5.8e-115


>>CCDS135.1 DRAXIN gene_id:374946|Hs108|chr1              (349 aa)
 initn: 2434 init1: 2434 opt: 2434  Z-score: 2177.5  bits: 411.4 E(32554): 5.8e-115
Smith-Waterman score: 2434; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349)

               10        20        30        40        50        60
pF1KE2 MAGPAIHTAPMLFLVLLLPLELSLAGALAPGTPARNLPENHIDLPGPALWTPQASHHRRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGPAIHTAPMLFLVLLLPLELSLAGALAPGTPARNLPENHIDLPGPALWTPQASHHRRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 GPGKKEWGPGLPSQAQDGAVVTATRQASRLPEAEGLLPEQSPAGLLQDKDLLLGLALPYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GPGKKEWGPGLPSQAQDGAVVTATRQASRLPEAEGLLPEQSPAGLLQDKDLLLGLALPYP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 EKENRPPGWERTRKRSREHKRRRDRLRLHQGRALVRGPSSLMKKAELSEAQVLDAAMEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EKENRPPGWERTRKRSREHKRRRDRLRLHQGRALVRGPSSLMKKAELSEAQVLDAAMEES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 STSLAPTMFFLTTFEAAPATEESLILPVTSLRPQQAQPRSDGEVMPTLDMALFDWTDYED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 STSLAPTMFFLTTFEAAPATEESLILPVTSLRPQQAQPRSDGEVMPTLDMALFDWTDYED
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LKPDGWPSAKKKEKHRGKLSSDGNETSPAEGEPCDHHQDCLPGTCCDLREHLCTPHNRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LKPDGWPSAKKKEKHRGKLSSDGNETSPAEGEPCDHHQDCLPGTCCDLREHLCTPHNRGL
              250       260       270       280       290       300

              310       320       330       340         
pF1KE2 NNKCFDDCMCVEGLRCYAKFHRNRRVTRRKGRCVEPETANGDQGSFINV
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NNKCFDDCMCVEGLRCYAKFHRNRRVTRRKGRCVEPETANGDQGSFINV
              310       320       330       340         




349 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 17:03:06 2016 done: Tue Nov  8 17:03:06 2016
 Total Scan time:  2.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]