FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2598, 387 aa
  1>>>pF1KE2598 387 - 387 aa - 387 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9933+/-0.000919; mu= 14.0758+/- 0.055
 mean_var=83.7500+/-16.731, 0's: 0 Z-trim(106.7): 19  B-trim: 0 in 0/50
 Lambda= 0.140146
 statistics sampled from 9152 (9163) to 9152 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.281), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS5617.1 GTPBP10 gene_id:85865|Hs108|chr7        ( 387) 2521 519.5  2e-147
CCDS43614.1 GTPBP10 gene_id:85865|Hs108|chr7       ( 308) 1525 318.1 6.9e-87
CCDS13492.1 MTG2 gene_id:26164|Hs108|chr20         ( 406)  485 107.9 1.7e-23


>>CCDS5617.1 GTPBP10 gene_id:85865|Hs108|chr7             (387 aa)
 initn: 2521 init1: 2521 opt: 2521  Z-score: 2760.2  bits: 519.5 E(32554): 2e-147
Smith-Waterman score: 2521; 99.5% identity (99.7% similar) in 387 aa overlap (1-387:1-387)

               10        20        30        40        50        60
pF1KE2 MVHCSCVLFRKYGNFIDKLRLFTRGGSGGMGYPRLGGEGGKGGDVWVVAQNRMTLKQLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MVHCSCVLFRKYGNFIDKLRLFTRGGSGGMGYPRLGGEGGKGGDVWVVAQNRMTLKQLKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RYPRKRFVAGVGANSKISALKGSKGKDWEIPVPVGISVTDENGKIIGELSKENDRILVAQ
       ::::::::::::::::::::::::::: :::::::::::::::::::::.::::::::::
CCDS56 RYPRKRFVAGVGANSKISALKGSKGKDCEIPVPVGISVTDENGKIIGELNKENDRILVAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GGLGGKLLTNFLPLKGQKRIIHLDLKLIADVGLVGFPNAGKSSLLSCVSHAKPAIADYAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GGLGGKLLTNFLPLKGQKRIIHLDLKLIADVGLVGFPNAGKSSLLSCVSHAKPAIADYAF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 TTLKPELGKIMYSDFKQISVADLPGLIEGAHMNKGMGHKFLKHIERTRQLLFVVDISGFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TTLKPELGKIMYSDFKQISVADLPGLIEGAHMNKGMGHKFLKHIERTRQLLFVVDISGFQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LSSHTQYRTAFETIILLTKELELYKEELQTKPALLAVNKMDLPDAQDKFHELMSQLQNPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LSSHTQYRTAFETIILLTKELELYKEELQTKPALLAVNKMDLPDAQDKFHELMSQLQNPK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 DFLHLFEKNMIPERTVEFQHIIPISAVTGEGIEELKNCIRKSLDEQANQENDALHKKQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DFLHLFEKNMIPERTVEFQHIIPISAVTGEGIEELKNCIRKSLDEQANQENDALHKKQLL
              310       320       330       340       350       360

              370       380       
pF1KE2 NLWISDTMSSTEPPSKHAVTTSKMDII
       :::::::::::::::::::::::::::
CCDS56 NLWISDTMSSTEPPSKHAVTTSKMDII
              370       380       

>>CCDS43614.1 GTPBP10 gene_id:85865|Hs108|chr7            (308 aa)
 initn: 2025 init1: 1506 opt: 1525  Z-score: 1673.4  bits: 318.1 E(32554): 6.9e-87
Smith-Waterman score: 1871; 79.6% identity (79.6% similar) in 387 aa overlap (1-387:1-308)

               10        20        30        40        50        60
pF1KE2 MVHCSCVLFRKYGNFIDKLRLFTRGGSGGMGYPRLGGEGGKGGDVWVVAQNRMTLKQLKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVHCSCVLFRKYGNFIDKLRLFTRGGSGGMGYPRLGGEGGKGGDVWVVAQNRMTLKQLKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RYPRKRFVAGVGANSKISALKGSKGKDWEIPVPVGISVTDENGKIIGELSKENDRILVAQ
       ::::::::::::::::                                            
CCDS43 RYPRKRFVAGVGANSK--------------------------------------------
               70                                                  

              130       140       150       160       170       180
pF1KE2 GGLGGKLLTNFLPLKGQKRIIHLDLKLIADVGLVGFPNAGKSSLLSCVSHAKPAIADYAF
                                          :::::::::::::::::::::::::
CCDS43 -----------------------------------FPNAGKSSLLSCVSHAKPAIADYAF
                                            80        90       100 

              190       200       210       220       230       240
pF1KE2 TTLKPELGKIMYSDFKQISVADLPGLIEGAHMNKGMGHKFLKHIERTRQLLFVVDISGFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TTLKPELGKIMYSDFKQISVADLPGLIEGAHMNKGMGHKFLKHIERTRQLLFVVDISGFQ
             110       120       130       140       150       160 

              250       260       270       280       290       300
pF1KE2 LSSHTQYRTAFETIILLTKELELYKEELQTKPALLAVNKMDLPDAQDKFHELMSQLQNPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LSSHTQYRTAFETIILLTKELELYKEELQTKPALLAVNKMDLPDAQDKFHELMSQLQNPK
             170       180       190       200       210       220 

              310       320       330       340       350       360
pF1KE2 DFLHLFEKNMIPERTVEFQHIIPISAVTGEGIEELKNCIRKSLDEQANQENDALHKKQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DFLHLFEKNMIPERTVEFQHIIPISAVTGEGIEELKNCIRKSLDEQANQENDALHKKQLL
             230       240       250       260       270       280 

              370       380       
pF1KE2 NLWISDTMSSTEPPSKHAVTTSKMDII
       :::::::::::::::::::::::::::
CCDS43 NLWISDTMSSTEPPSKHAVTTSKMDII
             290       300        

>>CCDS13492.1 MTG2 gene_id:26164|Hs108|chr20              (406 aa)
 initn: 668 init1: 447 opt: 485  Z-score: 535.1  bits: 107.9 E(32554): 1.7e-23
Smith-Waterman score: 677; 39.5% identity (62.9% similar) in 367 aa overlap (9-350:68-396)

                                     10        20        30        
pF1KE2                       MVHCSCVLFRKYGNFIDKLRLFTRGGSGGMGY------
                                     ...:  :.:  :... ::.:: :       
CCDS13 RASPRLLSVGRADLAKHQELPGKKLLSEKKLKRY--FVDYRRVLVCGGNGGAGASCFHSE
        40        50        60        70          80        90     

                   40         50        60        70        80     
pF1KE2 PRL------GGEGGKGGDVWV-VAQNRMTLKQLKDRYPRKRFVAGVGANSKISALKGSKG
       ::       ::.::.:: : . : :.  .:... .::  . : .:  ..::     : .:
CCDS13 PRKEFGGPDGGDGGNGGHVILRVDQQVKSLSSVLSRY--QGF-SGEDGGSKNCF--GRSG
         100       110       120       130          140         150

          90       100       110       120       130               
pF1KE2 KDWEIPVPVGISVTDENGKIIGELSKENDRILVAQGGLGGKLLTNFL------PLK----
           : :::: ... :.:.....::  .:. ..: :: :::    ::      :.     
CCDS13 AVLYIRVPVG-TLVKEGGRVVADLSCVGDEYIAALGGAGGKGNRFFLANNNRAPVTCTPG
              160        170       180       190       200         

           140       150       160       170       180       190   
pF1KE2 --GQKRIIHLDLKLIADVGLVGFPNAGKSSLLSCVSHAKPAIADYAFTTLKPELGKIMYS
         ::.:..::.:: .: .:.::::::::::::  .:.:.::.:.: ::::::..: . : 
CCDS13 QPGQQRVLHLELKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYE
     210       220       230       240       250       260         

           200       210       220       230       240       250   
pF1KE2 DFKQISVADLPGLIEGAHMNKGMGHKFLKHIERTRQLLFVVDISGFQLSSHTQYRTAFET
          ::.:::.::.:.:::.:.:.:  ::.:::: : ::::::.:  :    ::       
CCDS13 GHLQIAVADIPGIIRGAHQNRGLGSAFLRHIERCRFLLFVVDLS--QPEPWTQ-------
     270       280       290       300       310         320       

           260       270       280       290       300       310   
pF1KE2 IILLTKELELYKEELQTKPALLAVNKMDLPDAQDKFHELMSQLQNPKDFLHLFEKNMIPE
       .  :  :::.:.. :...:  ...::.:::.:: .    .:::..     ::        
CCDS13 VDDLKYELEMYEKGLSARPHAIVANKIDLPEAQAN----LSQLRD-----HLG-------
              330       340       350           360                

           320       330       340       350       360       370   
pF1KE2 RTVEFQHIIPISAVTGEGIEELKNCIRKSLDEQANQENDALHKKQLLNLWISDTMSSTEP
            :..: .::.:::..:.:   ..   :  :. :                       
CCDS13 -----QEVIVLSALTGENLEQLLLHLKVLYDAYAEAELGQGRQPLRW             
               370       380       390       400                   

           380       
pF1KE2 PSKHAVTTSKMDII




387 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 16:54:10 2016 done: Tue Nov  8 16:54:10 2016
 Total Scan time:  2.200 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]