FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2591, 541 aa
  1>>>pF1KE2591 541 - 541 aa - 541 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2618+/-0.00114; mu= 0.4771+/- 0.068
 mean_var=200.8250+/-39.924, 0's: 0 Z-trim(109.0): 17  B-trim: 81 in 1/52
 Lambda= 0.090503
 statistics sampled from 10590 (10593) to 10590 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.325), width:  16
 Scan time:  2.420

The best scores are:                                      opt bits E(32554)
CCDS31997.1 RNF219 gene_id:79596|Hs108|chr13       ( 726) 3462 465.0 1.3e-130


>>CCDS31997.1 RNF219 gene_id:79596|Hs108|chr13            (726 aa)
 initn: 3461 init1: 3461 opt: 3462  Z-score: 2458.3  bits: 465.0 E(32554): 1.3e-130
Smith-Waterman score: 3462; 99.6% identity (99.6% similar) in 540 aa overlap (1-538:78-617)

                                             10        20        30
pF1KE2                               MLSHTVRKHLRKTRLELLHKEYEDEIDCLQ
                                     ::::::::::::::::::::::::::::::
CCDS31 NNSQCPACRVPITPENPCKEIIGGTSESEPMLSHTVRKHLRKTRLELLHKEYEDEIDCLQ
        50        60        70        80        90       100       

               40        50        60        70        80        90
pF1KE2 KEVEELKSKNLSLESQIKTILDPLTLVQGNQNEDKHLVTDNPSKINPETVAEWKKKLRTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KEVEELKSKNLSLESQIKTILDPLTLVQGNQNEDKHLVTDNPSKINPETVAEWKKKLRTA
       110       120       130       140       150       160       

              100       110       120       130       140       150
pF1KE2 NEIYEKVKDDVDKLKEANKKLKLENGGLVRENLRLKAEVDNRSPQKFGRFAVAALQSKVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NEIYEKVKDDVDKLKEANKKLKLENGGLVRENLRLKAEVDNRSPQKFGRFAVAALQSKVE
       170       180       190       200       210       220       

              160       170       180       190       200       210
pF1KE2 QYERETNRLKKALERSDKYIEELESQVAQLKNSSEEKEAMNSICQTALSADGKGSKGSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QYERETNRLKKALERSDKYIEELESQVAQLKNSSEEKEAMNSICQTALSADGKGSKGSEE
       230       240       250       260       270       280       

              220       230       240       250       260       270
pF1KE2 DVVSKNQGDSARKQPGSSTSSSSHLAKPSSSRLCDTSSARQESTSKADLNCSKNKDLYQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DVVSKNQGDSARKQPGSSTSSSSHLAKPSSSRLCDTSSARQESTSKADLNCSKNKDLYQE
       290       300       310       320       330       340       

              280       290       300       310       320       330
pF1KE2 QVEVMLDVTDTSMDTYLEREWGNKPSDCVPYKDEELYDLPAPCTPLSLSCLQLSTPENRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QVEVMLDVTDTSMDTYLEREWGNKPSDCVPYKDEELYDLPAPCTPLSLSCLQLSTPENRE
       350       360       370       380       390       400       

              340       350       360       370       380       390
pF1KE2 SSVVQAGGSKKHSNHLRKLVFDDFCDSSNVSNKDSSEDDISRSENEKKSECFSSPKTGFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SSVVQAGGSKKHSNHLRKLVFDDFCDSSNVSNKDSSEDDISRSENEKKSECFSSPKTGFW
       410       420       430       440       450       460       

              400       410       420       430       440       450
pF1KE2 DCCSTSYAQNLDFESSEGNTIANSVGEISSKLSEKSGLCLSKRLNSIRSFEMNRTRTSSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DCCSTSYAQNLDFESSEGNTIANSVGEISSKLSEKSGLCLSKRLNSIRSFEMNRTRTSSE
       470       480       490       500       510       520       

              460       470       480       490       500       510
pF1KE2 ASMDAAYLDKISELDSMMSESDNSKSPCNNGFKSLDLDGLSKSSQGSEFLEEPDKLEEKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ASMDAAYLDKISELDSMMSESDNSKSPCNNGFKSLDLDGLSKSSQGSEFLEEPDKLEEKT
       530       540       550       560       570       580       

              520       530         540                            
pF1KE2 ELNLSKGSLTNDQLENGSEWKPTSFF--SPLSI                           
       ::::::::::::::::::::::::::  ::                              
CCDS31 ELNLSKGSLTNDQLENGSEWKPTSFFLLSPSDQEMNEDFSLHSSSCPVTNEIKPPSCLFQ
       590       600       610       620       630       640       




541 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 16:42:46 2016 done: Tue Nov  8 16:42:46 2016
 Total Scan time:  2.420 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]