Result of FASTA (omim) for
pFN21AE2584
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2584, 206 aa
1>>>pF1KE2584 206 - 206 aa - 206 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1763+/-0.000317; mu= 9.9489+/- 0.020
mean_var=93.5197+/-18.924, 0's: 0 Z-trim(116.8): 42 B-trim: 71 in 1/52
Lambda= 0.132624
statistics sampled from 28224 (28266) to 28224 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.331), width: 16
Scan time: 5.490
The best scores are: opt bits E(85289)
NP_003279 (OMIM: 603747) tumor protein D54 isoform ( 206) 1300 258.3 6.2e-69
XP_011527337 (OMIM: 603747) PREDICTED: tumor prote ( 186) 1089 217.9 8.1e-57
NP_955395 (OMIM: 603747) tumor protein D54 isoform ( 200) 997 200.4 1.7e-51
XP_011527336 (OMIM: 603747) PREDICTED: tumor prote ( 209) 997 200.4 1.8e-51
NP_955392 (OMIM: 603747) tumor protein D54 isoform ( 229) 997 200.4 1.9e-51
NP_955393 (OMIM: 603747) tumor protein D54 isoform ( 209) 994 199.8 2.6e-51
NP_955394 (OMIM: 603747) tumor protein D54 isoform ( 220) 983 197.7 1.2e-50
NP_001230824 (OMIM: 603747) tumor protein D54 isof ( 222) 983 197.7 1.2e-50
NP_001230820 (OMIM: 603747) tumor protein D54 isof ( 181) 961 193.4 1.9e-49
XP_016883527 (OMIM: 603747) PREDICTED: tumor prote ( 189) 783 159.4 3.5e-39
NP_955391 (OMIM: 603747) tumor protein D54 isoform ( 186) 710 145.4 5.5e-35
NP_001230823 (OMIM: 603747) tumor protein D54 isof ( 152) 664 136.6 2.1e-32
NP_001230821 (OMIM: 603747) tumor protein D54 isof ( 163) 532 111.3 8.8e-25
NP_001020424 (OMIM: 604068) tumor protein D52 isof ( 207) 447 95.1 8.4e-20
NP_001274069 (OMIM: 604068) tumor protein D52 isof ( 247) 443 94.4 1.7e-19
NP_001274071 (OMIM: 604068) tumor protein D52 isof ( 238) 433 92.5 6e-19
NP_001305832 (OMIM: 604069) tumor protein D53 isof ( 209) 391 84.4 1.4e-16
NP_003278 (OMIM: 604069) tumor protein D53 isoform ( 204) 385 83.3 3.1e-16
NP_001003395 (OMIM: 604069) tumor protein D53 isof ( 175) 382 82.6 4.1e-16
XP_005267179 (OMIM: 604069) PREDICTED: tumor prote ( 175) 382 82.6 4.1e-16
XP_006715620 (OMIM: 604069) PREDICTED: tumor prote ( 166) 363 79.0 4.8e-15
XP_016866726 (OMIM: 604069) PREDICTED: tumor prote ( 176) 363 79.0 5.1e-15
NP_001274073 (OMIM: 604068) tumor protein D52 isof ( 145) 333 73.2 2.3e-13
NP_005070 (OMIM: 604068) tumor protein D52 isoform ( 184) 333 73.3 2.8e-13
NP_001020423 (OMIM: 604068) tumor protein D52 isof ( 224) 329 72.6 5.6e-13
NP_001274072 (OMIM: 604068) tumor protein D52 isof ( 233) 329 72.6 5.8e-13
NP_001003397 (OMIM: 604069) tumor protein D53 isof ( 131) 310 68.8 4.5e-12
NP_001003396 (OMIM: 604069) tumor protein D53 isof ( 144) 310 68.8 4.9e-12
XP_016866727 (OMIM: 604069) PREDICTED: tumor prote ( 163) 310 68.9 5.4e-12
NP_001278955 (OMIM: 604069) tumor protein D53 isof ( 102) 307 68.2 5.4e-12
XP_016866729 (OMIM: 604069) PREDICTED: tumor prote ( 102) 307 68.2 5.4e-12
NP_001305836 (OMIM: 604069) tumor protein D53 isof ( 102) 307 68.2 5.4e-12
XP_016866728 (OMIM: 604069) PREDICTED: tumor prote ( 115) 307 68.2 6e-12
NP_001287923 (OMIM: 604069) tumor protein D53 isof ( 191) 310 68.9 6.1e-12
>>NP_003279 (OMIM: 603747) tumor protein D54 isoform e [ (206 aa)
initn: 1300 init1: 1300 opt: 1300 Z-score: 1358.6 bits: 258.3 E(85289): 6.2e-69
Smith-Waterman score: 1300; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)
10 20 30 40 50 60
pF1KE2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRNSATFKSFEDRVGTIKSKVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRNSATFKSFEDRVGTIKSKVVG
130 140 150 160 170 180
190 200
pF1KE2 DRENGSDNLPSSAGSGDKPLSDPAPF
::::::::::::::::::::::::::
NP_003 DRENGSDNLPSSAGSGDKPLSDPAPF
190 200
>>XP_011527337 (OMIM: 603747) PREDICTED: tumor protein D (186 aa)
initn: 1089 init1: 1089 opt: 1089 Z-score: 1141.0 bits: 217.9 E(85289): 8.1e-57
Smith-Waterman score: 1089; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KE2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRNSATFKSFEDRVGTIKSKVVG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRNSATFKSFEDRVGTIKFSPVT
130 140 150 160 170 180
190 200
pF1KE2 DRENGSDNLPSSAGSGDKPLSDPAPF
XP_011 TSWKIL
>>NP_955395 (OMIM: 603747) tumor protein D54 isoform d [ (200 aa)
initn: 1022 init1: 694 opt: 997 Z-score: 1045.4 bits: 200.4 E(85289): 1.7e-51
Smith-Waterman score: 1083; 84.5% identity (84.5% similar) in 220 aa overlap (1-206:1-200)
10 20 30 40 50 60
pF1KE2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
::::::::::::::::::::::::::::::::::::::::::::::
NP_955 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAY--------------
70 80 90 100
130 140 150 160
pF1KE2 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDM--------------RNSATFKS
:::::::::::::::::::::::::::::::: ::::::::
NP_955 ------KKTQETLSQAGQKTSAALSTVGSAISRKLGDMSSYSIRHSISMPAMRNSATFKS
110 120 130 140 150 160
170 180 190 200
pF1KE2 FEDRVGTIKSKVVGDRENGSDNLPSSAGSGDKPLSDPAPF
::::::::::::::::::::::::::::::::::::::::
NP_955 FEDRVGTIKSKVVGDRENGSDNLPSSAGSGDKPLSDPAPF
170 180 190 200
>>XP_011527336 (OMIM: 603747) PREDICTED: tumor protein D (209 aa)
initn: 995 init1: 995 opt: 997 Z-score: 1045.2 bits: 200.4 E(85289): 1.8e-51
Smith-Waterman score: 1033; 88.4% identity (88.4% similar) in 198 aa overlap (1-175:1-198)
10 20 30 40 50 60
pF1KE2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
70 80 90 100 110 120
130 140 150
pF1KE2 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMR---------------------
:::::::::::::::::::::::::::::::::::::::
XP_011 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRAHPFSHSFSSYSIRHSISMPA
130 140 150 160 170 180
160 170 180 190 200
pF1KE2 --NSATFKSFEDRVGTIKSKVVGDRENGSDNLPSSAGSGDKPLSDPAPF
::::::::::::::::
XP_011 MRNSATFKSFEDRVGTIKFSPVTTSWKIL
190 200
>>NP_955392 (OMIM: 603747) tumor protein D54 isoform a [ (229 aa)
initn: 995 init1: 995 opt: 997 Z-score: 1044.6 bits: 200.4 E(85289): 1.9e-51
Smith-Waterman score: 1244; 90.0% identity (90.0% similar) in 229 aa overlap (1-206:1-229)
10 20 30 40 50 60
pF1KE2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
70 80 90 100 110 120
130 140 150
pF1KE2 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMR---------------------
:::::::::::::::::::::::::::::::::::::::
NP_955 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRAHPFSHSFSSYSIRHSISMPA
130 140 150 160 170 180
160 170 180 190 200
pF1KE2 --NSATFKSFEDRVGTIKSKVVGDRENGSDNLPSSAGSGDKPLSDPAPF
:::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MRNSATFKSFEDRVGTIKSKVVGDRENGSDNLPSSAGSGDKPLSDPAPF
190 200 210 220
>>NP_955393 (OMIM: 603747) tumor protein D54 isoform b [ (209 aa)
initn: 1037 init1: 694 opt: 994 Z-score: 1042.1 bits: 199.8 E(85289): 2.6e-51
Smith-Waterman score: 1065; 81.2% identity (81.2% similar) in 229 aa overlap (1-206:1-209)
10 20 30 40 50 60
pF1KE2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
::::::::::::::::::::::::::::::::::::::::::::::
NP_955 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAY--------------
70 80 90 100
130 140 150
pF1KE2 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMR---------------------
:::::::::::::::::::::::::::::::::
NP_955 ------KKTQETLSQAGQKTSAALSTVGSAISRKLGDMRAHPFSHSFSSYSIRHSISMPA
110 120 130 140 150 160
160 170 180 190 200
pF1KE2 --NSATFKSFEDRVGTIKSKVVGDRENGSDNLPSSAGSGDKPLSDPAPF
:::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MRNSATFKSFEDRVGTIKSKVVGDRENGSDNLPSSAGSGDKPLSDPAPF
170 180 190 200
>>NP_955394 (OMIM: 603747) tumor protein D54 isoform c [ (220 aa)
initn: 1008 init1: 983 opt: 983 Z-score: 1030.4 bits: 197.7 E(85289): 1.2e-50
Smith-Waterman score: 1262; 93.6% identity (93.6% similar) in 220 aa overlap (1-206:1-220)
10 20 30 40 50 60
pF1KE2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
70 80 90 100 110 120
130 140 150 160
pF1KE2 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDM--------------RNSATFKS
:::::::::::::::::::::::::::::::::::::: ::::::::
NP_955 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMSSYSIRHSISMPAMRNSATFKS
130 140 150 160 170 180
170 180 190 200
pF1KE2 FEDRVGTIKSKVVGDRENGSDNLPSSAGSGDKPLSDPAPF
::::::::::::::::::::::::::::::::::::::::
NP_955 FEDRVGTIKSKVVGDRENGSDNLPSSAGSGDKPLSDPAPF
190 200 210 220
>>NP_001230824 (OMIM: 603747) tumor protein D54 isoform (222 aa)
initn: 983 init1: 983 opt: 983 Z-score: 1030.3 bits: 197.7 E(85289): 1.2e-50
Smith-Waterman score: 983; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KE2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRNSATFKSFEDRVGTIKSKVVG
::::::::::::::::::::::::::::::::::::::
NP_001 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMSLRLWVTERTAVTTSLPQRGVV
130 140 150 160 170 180
190 200
pF1KE2 DRENGSDNLPSSAGSGDKPLSDPAPF
NP_001 TSPCRIPHLSKPVVASPAAEHTQPSLSITAAALFSGAASQGG
190 200 210 220
>>NP_001230820 (OMIM: 603747) tumor protein D54 isoform (181 aa)
initn: 961 init1: 961 opt: 961 Z-score: 1008.9 bits: 193.4 E(85289): 1.9e-49
Smith-Waterman score: 1095; 87.9% identity (87.9% similar) in 206 aa overlap (1-206:1-181)
10 20 30 40 50 60
pF1KE2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
::::::::::::::::::::::::::::::: ::::
NP_001 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGV-------------------------EEEI
10 20 30
70 80 90 100 110 120
pF1KE2 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE2 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRNSATFKSFEDRVGTIKSKVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRNSATFKSFEDRVGTIKSKVVG
100 110 120 130 140 150
190 200
pF1KE2 DRENGSDNLPSSAGSGDKPLSDPAPF
::::::::::::::::::::::::::
NP_001 DRENGSDNLPSSAGSGDKPLSDPAPF
160 170 180
>>XP_016883527 (OMIM: 603747) PREDICTED: tumor protein D (189 aa)
initn: 811 init1: 694 opt: 783 Z-score: 824.5 bits: 159.4 E(85289): 3.5e-39
Smith-Waterman score: 854; 78.3% identity (78.3% similar) in 198 aa overlap (1-175:1-178)
10 20 30 40 50 60
pF1KE2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTKVEEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAYVKTSEKLGEWNEKV
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSSAY--------------
70 80 90 100
130 140 150
pF1KE2 TQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMR---------------------
:::::::::::::::::::::::::::::::::
XP_016 ------KKTQETLSQAGQKTSAALSTVGSAISRKLGDMRAHPFSHSFSSYSIRHSISMPA
110 120 130 140 150 160
160 170 180 190 200
pF1KE2 --NSATFKSFEDRVGTIKSKVVGDRENGSDNLPSSAGSGDKPLSDPAPF
::::::::::::::::
XP_016 MRNSATFKSFEDRVGTIKFSPVTTSWKIL
170 180
206 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:34:06 2016 done: Tue Nov 8 16:34:07 2016
Total Scan time: 5.490 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]