FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2574, 441 aa
  1>>>pF1KE2574 441 - 441 aa - 441 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4472+/-0.000854; mu= 17.3966+/- 0.051
 mean_var=72.5852+/-14.879, 0's: 0 Z-trim(107.3): 17  B-trim: 0 in 0/49
 Lambda= 0.150539
 statistics sampled from 9475 (9486) to 9475 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.291), width:  16
 Scan time:  3.060

The best scores are:                                      opt bits E(32554)
CCDS9698.1 L2HGDH gene_id:79944|Hs108|chr14        ( 463) 2686 592.6 2.8e-169


>>CCDS9698.1 L2HGDH gene_id:79944|Hs108|chr14             (463 aa)
 initn: 2678 init1: 2678 opt: 2686  Z-score: 3152.6  bits: 592.6 E(32554): 2.8e-169
Smith-Waterman score: 2686; 94.6% identity (96.2% similar) in 426 aa overlap (1-426:1-421)

               10        20        30        40        50        60
pF1KE2 MVPALRYLVGACGRARGRFAGGSPGACGFASGRPRPLCGGSRSASTSSFDIVIVGGGIVG
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS96 MVPALRYLVGACGRARGLFAGGSPGACGFASGRPRPLCGGSRSASTSSFDIVIVGGGIVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LASARALILRHPSLSIGVLEKEKDLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LASARALILRHPSLSIGVLEKEKDLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 YEYCQQKGISYKQCGKLIVAVEQEEIPRLQALYEKGLQNGVPGLRLIQQEDIKKKEPYCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 YEYCQQKGISYKQCGKLIVAVEQEEIPRLQALYEKGLQNGVPGLRLIQQEDIKKKEPYCR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 GLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSVLTNFEVKGIEMAKESPSRSIDGMQYPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSVLTNFEVKGIEMAKESPSRSIDGMQYPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 VIKNTKGEEIRCQYVVTCAGLYSDRISELSGCTPDPRIVPFRGDYLLLKPEKCYLVKGNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VIKNTKGEEIRCQYVVTCAGLYSDRISELSGCTPDPRIVPFRGDYLLLKPEKCYLVKGNI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 YPVPDSRFPFLGVHFTPRMDGSIWLGPNAVLAFKREGYRPFDFSATDVMDIIINSGLIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 YPVPDSRFPFLGVHFTPRMDGSIWLGPNAVLAFKREGYRPFDFSATDVMDIIINSGLIKL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 ASQNFSYGVTEMYKACFLGATVKYLQKFIPEITISDILRQVAVRGPSWLWQQPMKVSDNN
       :::::::::::::::::::::::::::::::::::::::     ::. .  : .  . : 
CCDS96 ASQNFSYGVTEMYKACFLGATVKYLQKFIPEITISDILR-----GPAGVRAQALDRDGNL
              370       380       390            400       410     

              430       440                            
pF1KE2 IYCFLWRCFALLLTGSTCSFK                           
       .  :..                                          
CCDS96 VEDFVFDAGVGDIGNRILHVRNAPSPAATSSIAISGMIADEVQQRFEL
         420       430       440       450       460   




441 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:03:38 2016 done: Fri Nov  4 19:03:39 2016
 Total Scan time:  3.060 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]