FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2562, 265 aa
  1>>>pF1KE2562 265 - 265 aa - 265 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4870+/-0.000946; mu= 0.9986+/- 0.057
 mean_var=205.6136+/-41.578, 0's: 0 Z-trim(112.8): 31  B-trim: 595 in 1/50
 Lambda= 0.089443
 statistics sampled from 13509 (13533) to 13509 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.416), width:  16
 Scan time:  1.450

The best scores are:                                      opt bits E(32554)
CCDS4377.1 NPM1 gene_id:4869|Hs108|chr5            ( 265) 1765 239.7 1.6e-63
CCDS43399.1 NPM1 gene_id:4869|Hs108|chr5           ( 259) 1312 181.3 6.1e-46
CCDS4376.1 NPM1 gene_id:4869|Hs108|chr5            ( 294) 1312 181.3 6.7e-46


>>CCDS4377.1 NPM1 gene_id:4869|Hs108|chr5                 (265 aa)
 initn: 1765 init1: 1765 opt: 1765  Z-score: 1254.0  bits: 239.7 E(32554): 1.6e-63
Smith-Waterman score: 1765; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)

               10        20        30        40        50        60
pF1KE2 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 FDDEEAEEKAPVKKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FDDEEAEEKAPVKKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFI
              190       200       210       220       230       240

              250       260     
pF1KE2 NYVKNCFRMTDQEAIQDLWQWRKSL
       :::::::::::::::::::::::::
CCDS43 NYVKNCFRMTDQEAIQDLWQWRKSL
              250       260     

>>CCDS43399.1 NPM1 gene_id:4869|Hs108|chr5                (259 aa)
 initn: 1287 init1: 1287 opt: 1312  Z-score: 938.2  bits: 181.3 E(32554): 6.1e-46
Smith-Waterman score: 1436; 88.7% identity (88.7% similar) in 257 aa overlap (1-228:1-257)

               10        20        30        40        50        60
pF1KE2 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
              130       140       150       160       170       180

              190                                    200       210 
pF1KE2 FDDEEAEEKAPVKK-----------------------------GQESFKKQEKTPKTPKG
       ::::::::::::::                             :::::::::::::::::
CCDS43 FDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKG
              190       200       210       220       230       240

             220       230       240       250       260     
pF1KE2 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL
       :::::::::::::::::                                     
CCDS43 PSSVEDIKAKMQASIEKAH                                   
              250                                            

>>CCDS4376.1 NPM1 gene_id:4869|Hs108|chr5                 (294 aa)
 initn: 1287 init1: 1287 opt: 1312  Z-score: 937.5  bits: 181.3 E(32554): 6.7e-46
Smith-Waterman score: 1697; 90.1% identity (90.1% similar) in 294 aa overlap (1-265:1-294)

               10        20        30        40        50        60
pF1KE2 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
              130       140       150       160       170       180

              190                                    200       210 
pF1KE2 FDDEEAEEKAPVKK-----------------------------GQESFKKQEKTPKTPKG
       ::::::::::::::                             :::::::::::::::::
CCDS43 FDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKG
              190       200       210       220       230       240

             220       230       240       250       260     
pF1KE2 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL
              250       260       270       280       290    




265 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:58:27 2016 done: Tue Nov  8 10:58:27 2016
 Total Scan time:  1.450 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]