Result of FASTA (ccds) for
pFN21AE2547
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2547, 464 aa
1>>>pF1KE2547 464 - 464 aa - 464 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4484+/-0.000947; mu= 1.6942+/- 0.058
mean_var=299.2428+/-61.654, 0's: 0 Z-trim(114.9): 24 B-trim: 156 in 1/53
Lambda= 0.074142
statistics sampled from 15468 (15483) to 15468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.476), width: 16
Scan time: 3.740
The best scores are: opt bits E(32554)
CCDS6668.1 HNRNPK gene_id:3190|Hs108|chr9 ( 464) 3189 354.3 1.5e-97
CCDS6667.1 HNRNPK gene_id:3190|Hs108|chr9 ( 463) 3150 350.2 2.7e-96
>>CCDS6668.1 HNRNPK gene_id:3190|Hs108|chr9 (464 aa)
initn: 3189 init1: 3189 opt: 3189 Z-score: 1864.8 bits: 354.3 E(32554): 1.5e-97
Smith-Waterman score: 3189; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KE2 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
370 380 390 400 410 420
430 440 450 460
pF1KE2 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
430 440 450 460
>>CCDS6667.1 HNRNPK gene_id:3190|Hs108|chr9 (463 aa)
initn: 3228 init1: 3150 opt: 3150 Z-score: 1842.2 bits: 350.2 E(32554): 2.7e-96
Smith-Waterman score: 3150; 99.8% identity (100.0% similar) in 459 aa overlap (1-459:1-459)
10 20 30 40 50 60
pF1KE2 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
370 380 390 400 410 420
430 440 450 460
pF1KE2 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
::::::::::::::::::::::::::::::::::::::.
CCDS66 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF
430 440 450 460
464 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 03:53:29 2016 done: Tue Nov 8 03:53:29 2016
Total Scan time: 3.740 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]