FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2543, 265 aa
  1>>>pF1KE2543 265 - 265 aa - 265 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9354+/-0.00102; mu= 10.7964+/- 0.061
 mean_var=59.4975+/-11.770, 0's: 0 Z-trim(102.6): 15  B-trim: 0 in 0/51
 Lambda= 0.166274
 statistics sampled from 7024 (7026) to 7024 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.582), E-opt: 0.2 (0.216), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS34148.1 RICTOR gene_id:253260|Hs108|chr5       (1708) 1591 390.3 4.7e-108
CCDS68861.1 RICTOR gene_id:253260|Hs108|chr5       (1732) 1591 390.3 4.8e-108


>>CCDS34148.1 RICTOR gene_id:253260|Hs108|chr5            (1708 aa)
 initn: 1591 init1: 1591 opt: 1591  Z-score: 2053.3  bits: 390.3 E(32554): 4.7e-108
Smith-Waterman score: 1591; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KE2 MAAIGRGRSLKNLRVRGRNDSGEENVPLDLTREPSDNLREILQNVARLQGVSNMRKLGHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAAIGRGRSLKNLRVRGRNDSGEENVPLDLTREPSDNLREILQNVARLQGVSNMRKLGHL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NNFTKLLCDIGHSEEKLGFHYEDIIICLRLALLNEAKEVRAAGLRALRYLIQDSSILQKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NNFTKLLCDIGHSEEKLGFHYEDIIICLRLALLNEAKEVRAAGLRALRYLIQDSSILQKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 LKLKVDYLIARCIDIQQSNEVERTQALRLVRKMITVNASLFPSSVTNSLIAVGNDGLQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LKLKVDYLIARCIDIQQSNEVERTQALRLVRKMITVNASLFPSSVTNSLIAVGNDGLQER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 DRMVRACIAIICELALQNPEVVALRGGLNTILKNVIDCQLSRINEALITTILHLLNHPKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DRMVRACIAIICELALQNPEVVALRGGLNTILKNVIDCQLSRINEALITTILHLLNHPKT
              190       200       210       220       230       240

              250       260                                        
pF1KE2 RQYVRADVELEVGTLIFFSSFKILL                                   
       :::::::::::                                                 
CCDS34 RQYVRADVELERILAPYTDFHYRHSPDTAEGQLKEDREARFLASKMGIIATFRSWAGIIN
              250       260       270       280       290       300

>>CCDS68861.1 RICTOR gene_id:253260|Hs108|chr5            (1732 aa)
 initn: 1591 init1: 1591 opt: 1591  Z-score: 2053.2  bits: 390.3 E(32554): 4.8e-108
Smith-Waterman score: 1591; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KE2 MAAIGRGRSLKNLRVRGRNDSGEENVPLDLTREPSDNLREILQNVARLQGVSNMRKLGHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MAAIGRGRSLKNLRVRGRNDSGEENVPLDLTREPSDNLREILQNVARLQGVSNMRKLGHL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NNFTKLLCDIGHSEEKLGFHYEDIIICLRLALLNEAKEVRAAGLRALRYLIQDSSILQKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NNFTKLLCDIGHSEEKLGFHYEDIIICLRLALLNEAKEVRAAGLRALRYLIQDSSILQKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 LKLKVDYLIARCIDIQQSNEVERTQALRLVRKMITVNASLFPSSVTNSLIAVGNDGLQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LKLKVDYLIARCIDIQQSNEVERTQALRLVRKMITVNASLFPSSVTNSLIAVGNDGLQER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 DRMVRACIAIICELALQNPEVVALRGGLNTILKNVIDCQLSRINEALITTILHLLNHPKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 DRMVRACIAIICELALQNPEVVALRGGLNTILKNVIDCQLSRINEALITTILHLLNHPKT
              190       200       210       220       230       240

              250       260                                        
pF1KE2 RQYVRADVELEVGTLIFFSSFKILL                                   
       :::::::::::                                                 
CCDS68 RQYVRADVELERILAPYTDFHYRHSPDTAEGQLKEDREARFLASKMGIIATFRSWAGIIN
              250       260       270       280       290       300




265 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:46:48 2016 done: Tue Nov  8 03:46:48 2016
 Total Scan time:  2.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]