FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2540, 974 aa
  1>>>pF1KE2540 974 - 974 aa - 974 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1235+/-0.00104; mu= 3.1082+/- 0.062
 mean_var=169.4610+/-34.828, 0's: 0 Z-trim(109.7): 35  B-trim: 56 in 1/52
 Lambda= 0.098523
 statistics sampled from 11021 (11046) to 11021 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.339), width:  16
 Scan time:  4.410

The best scores are:                                      opt bits E(32554)
CCDS31206.1 BICC1 gene_id:80114|Hs108|chr10        ( 974) 6352 915.8       0


>>CCDS31206.1 BICC1 gene_id:80114|Hs108|chr10             (974 aa)
 initn: 6352 init1: 6352 opt: 6352  Z-score: 4887.3  bits: 915.8 E(32554):    0
Smith-Waterman score: 6352; 100.0% identity (100.0% similar) in 974 aa overlap (1-974:1-974)

               10        20        30        40        50        60
pF1KE2 MAAQGEPGYLAAQSDPGSNSERSTDSPVPGSEDDLVAGATLHSPEWSEERFRVDRKKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAAQGEPGYLAAQSDPGSNSERSTDSPVPGSEDDLVAGATLHSPEWSEERFRVDRKKLEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 MLQAAAEGKGRSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLQAAAEGKGRSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 MIMSVLDTKSNRVTLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MIMSVLDTKSNRVTLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 NQVSIAGQPAGVESARVRIRELLPLVLMFELPIAGILQPVPDPNSPSIQHISQTYNISVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NQVSIAGQPAGVESARVRIRELLPLVLMFELPIAGILQPVPDPNSPSIQHISQTYNISVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 FKQRSRMYGATVIVRGSQNNTSAVKEGTAMLLEHLAGSLASAIPVSTQLDIAAQHHLFMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FKQRSRMYGATVIVRGSQNNTSAVKEGTAMLLEHLAGSLASAIPVSTQLDIAAQHHLFMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 GRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYLMGCLPLVLMFDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYLMGCLPLVLMFDM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 KEEIEVDPQFIAQLMEQLDVFISIKPKPKQPSKSVIVKSVERNALNMYEARKCLLGLESS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KEEIEVDPQFIAQLMEQLDVFISIKPKPKQPSKSVIVKSVERNALNMYEARKCLLGLESS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 GVTIATSPSPASCPAGLACPSLDILASAGLGLTGLGLLGPTTLSLNTSTTPNSLLNALNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GVTIATSPSPASCPAGLACPSLDILASAGLGLTGLGLLGPTTLSLNTSTTPNSLLNALNS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 SVSPLQSPSSGTPSPTLWAPPLANTSSATGFSAIPHLMIPSTAQATLTNILLSGVPTYGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SVSPLQSPSSGTPSPTLWAPPLANTSSATGFSAIPHLMIPSTAQATLTNILLSGVPTYGH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 TAPSPPPGLTPVDVHINSMQTEGKKISAALNGHAQSPDIKYGAISTSSLGEKVLSANHGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TAPSPPPGLTPVDVHINSMQTEGKKISAALNGHAQSPDIKYGAISTSSLGEKVLSANHGD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 PSIQTSGSEQTSPKSSPTEGCNDAFVEVGMPRSPSHSGNAGDLKQMMCPSKVSCAKRQTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSIQTSGSEQTSPKSSPTEGCNDAFVEVGMPRSPSHSGNAGDLKQMMCPSKVSCAKRQTV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE2 ELLQGTKNSHLHSTDRLLSDPELSATESPLADKKAPGSERAAERAAAAQQNSERAHLAPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELLQGTKNSHLHSTDRLLSDPELSATESPLADKKAPGSERAAERAAAAQQNSERAHLAPR
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE2 SSYVNMQAFDYEQKKLLATKAMLKKPVVTEVRTPTNTWSGLGFSKSMPAETIKELRRANH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SSYVNMQAFDYEQKKLLATKAMLKKPVVTEVRTPTNTWSGLGFSKSMPAETIKELRRANH
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE2 VSYKPTMTTTYEGSSMSLSRSNSREHLGGGSESDNWRDRNGIGPGSHSEFAASIGSPKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VSYKPTMTTTYEGSSMSLSRSNSREHLGGGSESDNWRDRNGIGPGSHSEFAASIGSPKRK
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE2 QNKSTEHYLSSSNYMDCISSLTGSNGCNLNSSFKGSDLPELFSKLGLGKYTDVFQQQEID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QNKSTEHYLSSSNYMDCISSLTGSNGCNLNSSFKGSDLPELFSKLGLGKYTDVFQQQEID
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE2 LQTFLTLTDQDLKELGITTFGARRKMLLAISELNKNRRKLFESPNARTSFLEGGASGRLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LQTFLTLTDQDLKELGITTFGARRKMLLAISELNKNRRKLFESPNARTSFLEGGASGRLP
              910       920       930       940       950       960

              970    
pF1KE2 RQYHSDIASVSGRW
       ::::::::::::::
CCDS31 RQYHSDIASVSGRW
              970    




974 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:46:03 2016 done: Tue Nov  8 03:46:04 2016
 Total Scan time:  4.410 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]