FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2537, 285 aa
  1>>>pF1KE2537 285 - 285 aa - 285 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7034+/-0.000814; mu= 12.8227+/- 0.049
 mean_var=63.7994+/-12.561, 0's: 0 Z-trim(106.4): 11  B-trim: 0 in 0/49
 Lambda= 0.160571
 statistics sampled from 8971 (8975) to 8971 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.276), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS705.1 DDAH1 gene_id:23576|Hs108|chr1           ( 285) 1853 437.8 4.2e-123
CCDS81348.1 DDAH1 gene_id:23576|Hs108|chr1         ( 185) 1195 285.3 2.2e-77
CCDS44170.1 DDAH1 gene_id:23576|Hs108|chr1         ( 182) 1182 282.3 1.7e-76
CCDS4718.1 DDAH2 gene_id:23564|Hs108|chr6          ( 285)  899 216.8 1.4e-56


>>CCDS705.1 DDAH1 gene_id:23576|Hs108|chr1                (285 aa)
 initn: 1853 init1: 1853 opt: 1853  Z-score: 2323.5  bits: 437.8 E(32554): 4.2e-123
Smith-Waterman score: 1853; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)

               10        20        30        40        50        60
pF1KE2 MAGLGHPAAFGRATHAVVRALPESLGQHALRSAKGEEVDVARAERQHQLYVGVLGSKLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MAGLGHPAAFGRATHAVVRALPESLGQHALRSAKGEEVDVARAERQHQLYVGVLGSKLGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QVVELPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 QVVELPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 DENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 AGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 AGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPE
              190       200       210       220       230       240

              250       260       270       280     
pF1KE2 EYPESAKVYEKLKDHMLIPVSMSELEKVDGLLTCCSVLINKKVDS
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS70 EYPESAKVYEKLKDHMLIPVSMSELEKVDGLLTCCSVLINKKVDS
              250       260       270       280     

>>CCDS81348.1 DDAH1 gene_id:23576|Hs108|chr1              (185 aa)
 initn: 1195 init1: 1195 opt: 1195  Z-score: 1502.8  bits: 285.3 E(32554): 2.2e-77
Smith-Waterman score: 1195; 100.0% identity (100.0% similar) in 184 aa overlap (102-285:2-185)

              80        90       100       110       120       130 
pF1KE2 PDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDGGDV
                                     ::::::::::::::::::::::::::::::
CCDS81                              MVDMMKEALEKLQLNIVEMKDENATLDGGDV
                                            10        20        30 

             140       150       160       170       180       190 
pF1KE2 LFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSMAGPNLIAIGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSMAGPNLIAIGSS
              40        50        60        70        80        90 

             200       210       220       230       240       250 
pF1KE2 ESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEK
             100       110       120       130       140       150 

             260       270       280     
pF1KE2 LKDHMLIPVSMSELEKVDGLLTCCSVLINKKVDS
       ::::::::::::::::::::::::::::::::::
CCDS81 LKDHMLIPVSMSELEKVDGLLTCCSVLINKKVDS
             160       170       180     

>>CCDS44170.1 DDAH1 gene_id:23576|Hs108|chr1              (182 aa)
 initn: 1182 init1: 1182 opt: 1182  Z-score: 1486.7  bits: 282.3 E(32554): 1.7e-76
Smith-Waterman score: 1182; 100.0% identity (100.0% similar) in 182 aa overlap (104-285:1-182)

            80        90       100       110       120       130   
pF1KE2 CVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDGGDVLF
                                     ::::::::::::::::::::::::::::::
CCDS44                               MMKEALEKLQLNIVEMKDENATLDGGDVLF
                                             10        20        30

           140       150       160       170       180       190   
pF1KE2 TGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSMAGPNLIAIGSSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSMAGPNLIAIGSSES
               40        50        60        70        80        90

           200       210       220       230       240       250   
pF1KE2 AQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLK
              100       110       120       130       140       150

           260       270       280     
pF1KE2 DHMLIPVSMSELEKVDGLLTCCSVLINKKVDS
       ::::::::::::::::::::::::::::::::
CCDS44 DHMLIPVSMSELEKVDGLLTCCSVLINKKVDS
              160       170       180  

>>CCDS4718.1 DDAH2 gene_id:23564|Hs108|chr6               (285 aa)
 initn: 915 init1: 778 opt: 899  Z-score: 1129.1  bits: 216.8 E(32554): 1.4e-56
Smith-Waterman score: 899; 52.0% identity (77.1% similar) in 279 aa overlap (4-278:1-279)

                10        20        30        40        50         
pF1KE2 MAGLGHPA-AFGRATHAVVRALPESLGQHALRSAKGEEVDVARAERQHQLYVGVLGSKLG
          .: :. ..:: .::..:..::::..    .:    .:.:.:.:.: .  : : ..::
CCDS47    MGTPGEGLGRCSHALIRGVPESLASGEGAGAGLPALDLAKAQREHGVLGGKLRQRLG
                  10        20        30        40        50       

      60        70        80        90       100       110         
pF1KE2 LQVVELPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQLNIVEM
       ::..::: .::::   .. :.::.  .::::::: .:.:: ::: ...::. : : :::.
CCDS47 LQLLELPPEESLPLGPLLGDTAVIQGDTALITRPWSPARRPEVDGVRKALQDLGLRIVEI
        60        70        80        90       100       110       

     120       130       140       150       160       170         
pF1KE2 KDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCS
        :::::::: ::::::::::::::: ::.:::::.::::.:.:::::::.   ::...:.
CCDS47 GDENATLDGTDVLFTGREFFVGLSKWTNHRGAEIVADTFRDFAVSTVPVSGPSHLRGLCG
       120       130       140       150       160       170       

     180       190       200       210       220         230       
pF1KE2 MAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYL--NIPNKGHVLLHR
       :.::  .. :::..::::.. :  ..:: : .::.::: ::.:..:  ..:.    ::::
CCDS47 MGGPRTVVAGSSDAAQKAVRAMAVLTDHPYASLTLPDDAAADCLFLRPGLPGVPPFLLHR
       180       190       200       210       220       230       

       240       250       260        270       280     
pF1KE2 TPEEYPESAKVYEKLKDHMLIPVSMSELEKVD-GLLTCCSVLINKKVDS
          . :.: .. .::.:  :.::: :::::.  :: . : ::       
CCDS47 GGGDLPNSQEALQKLSDVTLVPVSCSELEKAGAGLSSLCLVLSTRPHS 
       240       250       260       270       280      




285 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:36:28 2016 done: Tue Nov  8 03:36:28 2016
 Total Scan time:  1.980 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]