FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2526, 192 aa
  1>>>pF1KE2526 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1791+/-0.00077; mu= 12.9998+/- 0.046
 mean_var=54.1385+/-11.050, 0's: 0 Z-trim(107.6): 15  B-trim: 564 in 2/49
 Lambda= 0.174310
 statistics sampled from 9675 (9682) to 9675 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.297), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS6563.1 SIGMAR1 gene_id:10280|Hs108|chr9        ( 192) 1301 334.8   2e-92
CCDS6562.1 SIGMAR1 gene_id:10280|Hs108|chr9        ( 223)  808 210.8 4.7e-55


>>CCDS6563.1 SIGMAR1 gene_id:10280|Hs108|chr9             (192 aa)
 initn: 1301 init1: 1301 opt: 1301  Z-score: 1773.0  bits: 334.8 E(32554): 2e-92
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR
              130       140       150       160       170       180

              190  
pF1KE2 LELTTYLFGQDP
       ::::::::::::
CCDS65 LELTTYLFGQDP
              190  

>>CCDS6562.1 SIGMAR1 gene_id:10280|Hs108|chr9             (223 aa)
 initn: 808 init1: 808 opt: 808  Z-score: 1101.9  bits: 210.8 E(32554): 4.7e-55
Smith-Waterman score: 1229; 86.1% identity (86.1% similar) in 223 aa overlap (1-192:1-223)

               10        20        30        40        50        60
pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSG--
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS65 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
               70        80        90       100       110       120

                                   120       130       140         
pF1KE2 -----------------------------ETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
                                    :::::::::::::::::::::::::::::::
CCDS65 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
              130       140       150       160       170       180

     150       160       170       180       190  
pF1KE2 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
       :::::::::::::::::::::::::::::::::::::::::::
CCDS65 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
              190       200       210       220   




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:27:18 2016 done: Tue Nov  8 03:27:19 2016
 Total Scan time:  1.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]