Result of FASTA (ccds) for
pFN21AE2517
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2517, 441 aa
1>>>pF1KE2517 441 - 441 aa - 441 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1240+/- 0.001; mu= 13.9966+/- 0.060
mean_var=104.4985+/-21.577, 0's: 0 Z-trim(106.5): 89 B-trim: 62 in 1/50
Lambda= 0.125464
statistics sampled from 8954 (9044) to 8954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.278), width: 16
Scan time: 2.480
The best scores are: opt bits E(32554)
CCDS8273.1 EED gene_id:8726|Hs108|chr11 ( 441) 3073 567.2 1.1e-161
CCDS76463.1 EED gene_id:8726|Hs108|chr11 ( 466) 2224 413.5 2.2e-115
CCDS81612.1 EED gene_id:8726|Hs108|chr11 ( 361) 1655 310.5 1.8e-84
>>CCDS8273.1 EED gene_id:8726|Hs108|chr11 (441 aa)
initn: 3073 init1: 3073 opt: 3073 Z-score: 3015.9 bits: 567.2 E(32554): 1.1e-161
Smith-Waterman score: 3073; 100.0% identity (100.0% similar) in 441 aa overlap (1-441:1-441)
10 20 30 40 50 60
pF1KE2 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR
370 380 390 400 410 420
430 440
pF1KE2 DSSILIAVCDDASIWRWDRLR
:::::::::::::::::::::
CCDS82 DSSILIAVCDDASIWRWDRLR
430 440
>>CCDS76463.1 EED gene_id:8726|Hs108|chr11 (466 aa)
initn: 2223 init1: 2223 opt: 2224 Z-score: 2185.1 bits: 413.5 E(32554): 2.2e-115
Smith-Waterman score: 3013; 94.6% identity (94.6% similar) in 466 aa overlap (1-441:1-466)
10 20 30 40 50 60
pF1KE2 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
250 260 270 280 290 300
310 320 330
pF1KE2 TRDIHRNYVDCVRWLGDLILSKS-------------------------CENAIVCWKPGK
::::::::::::::::::::::: ::::::::::::
CCDS76 TRDIHRNYVDCVRWLGDLILSKSGRAILHSHQQCMRDPVSPNLRQHLSCENAIVCWKPGK
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE2 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED
370 380 390 400 410 420
400 410 420 430 440
pF1KE2 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR
::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR
430 440 450 460
>>CCDS81612.1 EED gene_id:8726|Hs108|chr11 (361 aa)
initn: 1655 init1: 1655 opt: 1655 Z-score: 1630.0 bits: 310.5 E(32554): 1.8e-84
Smith-Waterman score: 2340; 81.9% identity (81.9% similar) in 441 aa overlap (1-441:1-361)
10 20 30 40 50 60
pF1KE2 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS
::
CCDS81 SA----------------------------------------------------------
310 320 330 340 350 360
pF1KE2 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
::::::::::::::::::::::::::::::::::::::
CCDS81 ----------------------SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ
250 260 270 280
370 380 390 400 410 420
pF1KE2 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR
290 300 310 320 330 340
430 440
pF1KE2 DSSILIAVCDDASIWRWDRLR
:::::::::::::::::::::
CCDS81 DSSILIAVCDDASIWRWDRLR
350 360
441 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 02:47:04 2016 done: Tue Nov 8 02:47:05 2016
Total Scan time: 2.480 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]