Result of FASTA (ccds) for
pFN21AE2476
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2476, 500 aa
1>>>pF1KE2476 500 - 500 aa - 500 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5218+/-0.000772; mu= 16.4109+/- 0.046
mean_var=59.9970+/-11.951, 0's: 0 Z-trim(107.5): 20 B-trim: 0 in 0/51
Lambda= 0.165581
statistics sampled from 9592 (9609) to 9592 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.295), width: 16
Scan time: 2.610
The best scores are: opt bits E(32554)
CCDS1606.1 B3GALNT2 gene_id:148789|Hs108|chr1 ( 500) 3455 833.7 0
CCDS60453.1 B3GALNT2 gene_id:148789|Hs108|chr1 ( 326) 1645 401.3 8.3e-112
CCDS13.1 B3GALT6 gene_id:126792|Hs108|chr1 ( 329) 296 79.1 8.5e-15
CCDS2227.1 B3GALT1 gene_id:8708|Hs108|chr2 ( 326) 270 72.9 6.2e-13
CCDS1383.1 B3GALT2 gene_id:8707|Hs108|chr1 ( 422) 267 72.2 1.3e-12
>>CCDS1606.1 B3GALNT2 gene_id:148789|Hs108|chr1 (500 aa)
initn: 3455 init1: 3455 opt: 3455 Z-score: 4454.5 bits: 833.7 E(32554): 0
Smith-Waterman score: 3455; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500)
10 20 30 40 50 60
pF1KE2 MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPADQLALFPQWKSTHYDVVVGVLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPADQLALFPQWKSTHYDVVVGVLSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RNNHELRNVIRSTWMRHLLQHPTLSQRVLVKFIIGAHGCEVPVEDREDPYSCKLLNITNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 RNNHELRNVIRSTWMRHLLQHPTLSQRVLVKFIIGAHGCEVPVEDREDPYSCKLLNITNP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VLNQEIEAFSLSEDTSSGLPEDRVVSVSFRVLYPIVITSLGVFYDANDVGFQRNITVKLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 VLNQEIEAFSLSEDTSSGLPEDRVVSVSFRVLYPIVITSLGVFYDANDVGFQRNITVKLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 QAEQEEALFIARFSPPSCGVQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QAEQEEALFIARFSPPSCGVQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLHK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 VTVNDGGGVLRVITAGEGALPHEFLEGVEGVAGGFIYTIQEGDALLHNLHSRPQRLIDHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 VTVNDGGGVLRVITAGEGALPHEFLEGVEGVAGGFIYTIQEGDALLHNLHSRPQRLIDHI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 RNLHEEDALLKEESSIYDDIVFVDVVDTYRNVPAKLLNFYRWTVETTSFNLLLKTDDDCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 RNLHEEDALLKEESSIYDDIVFVDVVDTYRNVPAKLLNFYRWTVETTSFNLLLKTDDDCY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 IDLEAVFNRIVQKNLDGPNFWWGNFRLNWAVDRTGKWQELEYPSPAYPAFACGSGYVISK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 IDLEAVFNRIVQKNLDGPNFWWGNFRLNWAVDRTGKWQELEYPSPAYPAFACGSGYVISK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 DIVKWLASNSGRLKTYQGEDVSMGIWMAAIGPKRYQDSLWLCEKTCETGMLSSPQYSPWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 DIVKWLASNSGRLKTYQGEDVSMGIWMAAIGPKRYQDSLWLCEKTCETGMLSSPQYSPWE
430 440 450 460 470 480
490 500
pF1KE2 LTELWKLKERCGDPCRCQAR
::::::::::::::::::::
CCDS16 LTELWKLKERCGDPCRCQAR
490 500
>>CCDS60453.1 B3GALNT2 gene_id:148789|Hs108|chr1 (326 aa)
initn: 1640 init1: 1640 opt: 1645 Z-score: 2120.8 bits: 401.3 E(32554): 8.3e-112
Smith-Waterman score: 1735; 86.9% identity (86.9% similar) in 312 aa overlap (10-280:10-321)
10 20 30
pF1KE2 MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPA-----------------------
::::::::::::::::::::::::::::
CCDS60 MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPAGGVSLLLPRLECNGAVSAHPNLH
10 20 30 40 50 60
40 50 60 70
pF1KE2 ------------------DQLALFPQWKSTHYDVVVGVLSARNNHELRNVIRSTWMRHLL
::::::::::::::::::::::::::::::::::::::::::
CCDS60 LPGSRDSPASASQVAGITDQLALFPQWKSTHYDVVVGVLSARNNHELRNVIRSTWMRHLL
70 80 90 100 110 120
80 90 100 110 120 130
pF1KE2 QHPTLSQRVLVKFIIGAHGCEVPVEDREDPYSCKLLNITNPVLNQEIEAFSLSEDTSSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QHPTLSQRVLVKFIIGAHGCEVPVEDREDPYSCKLLNITNPVLNQEIEAFSLSEDTSSGL
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE2 PEDRVVSVSFRVLYPIVITSLGVFYDANDVGFQRNITVKLYQAEQEEALFIARFSPPSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PEDRVVSVSFRVLYPIVITSLGVFYDANDVGFQRNITVKLYQAEQEEALFIARFSPPSCG
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE2 VQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLHKVTVNDGGGVLRVITAGEGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLHKVTVNDGGGVLRVITAGEGA
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE2 LPHEFLEGVEGVAGGFIYTIQEGDALLHNLHSRPQRLIDHIRNLHEEDALLKEESSIYDD
:::::::::::::::::::::
CCDS60 LPHEFLEGVEGVAGGFIYTIQGKFAS
310 320
>>CCDS13.1 B3GALT6 gene_id:126792|Hs108|chr1 (329 aa)
initn: 298 init1: 125 opt: 296 Z-score: 379.2 bits: 79.1 E(32554): 8.5e-15
Smith-Waterman score: 296; 28.3% identity (59.6% similar) in 198 aa overlap (305-496:104-301)
280 290 300 310 320 330
pF1KE2 FIYTIQEGDALLHNLHSRPQRLIDHIRNLHEEDALLKEESSIYDDIVFVDVV-DTYRNVP
:: :..:.. . :.... .. :.:.:.
CCDS13 SVIRSTWLARRGAPGDVWARFAVGTAGLGAEERRALEREQARHGDLLLLPALRDAYENLT
80 90 100 110 120 130
340 350 360 370 380 390
pF1KE2 AKLLNFYRWTVETTSFNLLLKTDDDCYIDLEAVFNRI-VQKNLDGPNFWWGNFRLNWAVD
::.: . : : ..:...::.::: . :.:.. .. ... ..:: : :
CCDS13 AKVLAMLAWLDEHVAFEFVLKADDDSFARLDALLAELRAREPARRRRLYWGFFSGRGRVK
140 150 160 170 180 190
400 410 420 430 440 450
pF1KE2 RTGKWQELEYP-SPAYPAFACGSGYVISKDIVKWLASNSGRLKTYQGEDVSMGIWMAAIG
:.:.: . : .: :.:::.: :.:..: . :.....::::.: :.: .
CCDS13 PGGRWREAAWQLCDYYLPYALGGGYVLSADLVHYLRLSRDYLRAWHSEDVSLGAWLAPVD
200 210 220 230 240 250
460 470 480 490 500
pF1KE2 PKRYQDSLWLCE---KTCETGMLSSPQYSPWELTELWKLKERCGDPCRCQAR
.: .: . : . : . .: . . : .. : : : :.
CCDS13 VQREHDPRFDTEYRSRGCSNQYLVTHKQSLEDMLEKHATLAREGRLCKREVQLRLSYVYD
260 270 280 290 300 310
CCDS13 WSAPPSQCCQRREGIP
320
>>CCDS2227.1 B3GALT1 gene_id:8708|Hs108|chr2 (326 aa)
initn: 258 init1: 110 opt: 270 Z-score: 345.7 bits: 72.9 E(32554): 6.2e-13
Smith-Waterman score: 270; 25.3% identity (61.6% similar) in 190 aa overlap (307-485:127-315)
280 290 300 310 320 330
pF1KE2 YTIQEGDALLHNLHSRPQRLIDHIRNLHEEDALLKEESSIYDDIVFVDVVDTYRNVPAKL
. ....::.:. ::. : .:.:.:. :
CCDS22 IRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKT
100 110 120 130 140 150
340 350 360 370 380 390
pF1KE2 LNFYRWTVETTS-FNLLLKTDDDCYIDLEAVFNRIVQKNLDGPNFWWGNFRLNWAV--DR
: .::.. : . ..:::.: ..... .. .... . .. .. .: . :
CCDS22 LMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDV
160 170 180 190 200 210
400 410 420 430 440 450
pF1KE2 TGKW---QELEYPSPAYPAFACGSGYVISKDIVKWLASNSGRLKTYQGEDVSMGIWMAAI
.:: ..: ::. :: : :.::..: :... . ..: . . . ::: .:. . .
CCDS22 RSKWYMPRDL-YPDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVGLCLRKL
220 230 240 250 260 270
460 470 480 490 500
pF1KE2 GPKRYQDS---LW-LCEKTCE-TGMLSSPQYSPWELTELWKLKERCGDPCRCQAR
: . .:.: : . . :. ... : :: :. ..:
CCDS22 GIHPFQNSGFNHWKMAYSLCRYRRVITVHQISPEEMHRIWNDMSSKKHLRC
280 290 300 310 320
>>CCDS1383.1 B3GALT2 gene_id:8707|Hs108|chr1 (422 aa)
initn: 193 init1: 111 opt: 267 Z-score: 339.9 bits: 72.2 E(32554): 1.3e-12
Smith-Waterman score: 275; 28.7% identity (59.7% similar) in 216 aa overlap (302-500:198-410)
280 290 300 310 320 330
pF1KE2 AGGFIYTIQEGDALLHNLHSRPQRLIDHIRNLHEEDALLKEESSIYDDIVFVDVVDTYRN
: . . :.: ::: : ::. . .::: :
CCDS13 RAIRQTWGNESLAPGIQITRIFLLGLSIKLNGYLQRAIL-EESRQYHDIIQQEYLDTYYN
170 180 190 200 210 220
340 350 360 370 380
pF1KE2 VPAKLLNFYRWTVE-TTSFNLLLKTDDDCYIDLEAVFNRIVQKNLDGP--NFWWGNFRLN
. : : . :.. . ..:::.: ... : ..:.... .: : :.. : . .
CCDS13 LTIKTLMGMNWVATYCPHIPYVMKTDSDMFVNTEYLINKLLKPDLP-PRHNYFTGYLMRG
230 240 250 260 270 280
390 400 410 420 430 440
pF1KE2 WAVDRT--GKWQ---ELEYPSPAYPAFACGSGYVISKDIVKWLASNSGRLKTYQGEDVSM
.: .:. .:: .: ::: ::.: :.:::.: :... . . : .. . ::: .
CCDS13 YAPNRNKDSKWYMPPDL-YPSERYPVFCSGTGYVFSGDLAEKIFKVSLGIRRLHLEDVYV
290 300 310 320 330 340
450 460 470 480 490
pF1KE2 GIWMAAI------GPKRYQDSLW-LCEKTCE-TGMLSSPQYSPWELTELWK-LKERCGDP
:: .: . :... . : . ..:. . ...: :..: :: . :. :.. .
CCDS13 GICLAKLRIDPVPPPNEFVFNHWRVSYSSCKYSHLITSHQFQPSELIKYWNHLQQNKHNA
350 360 370 380 390 400
500
pF1KE2 CRCQAR
: :.
CCDS13 CANAAKEKAGRYRHRKLH
410 420
500 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 20:35:47 2016 done: Mon Nov 7 20:35:48 2016
Total Scan time: 2.610 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]