Result of FASTA (omim) for
pFN21AE2475
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2475, 364 aa
1>>>pF1KE2475 364 - 364 aa - 364 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1682+/-0.000377; mu= 17.3789+/- 0.024
mean_var=73.2837+/-14.715, 0's: 0 Z-trim(113.4): 71 B-trim: 1395 in 1/56
Lambda= 0.149820
statistics sampled from 22593 (22669) to 22593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.266), width: 16
Scan time: 6.950
The best scores are: opt bits E(85289)
NP_001159482 (OMIM: 608024) enoyl-CoA delta isomer ( 364) 2387 525.4 8e-149
NP_006108 (OMIM: 608024) enoyl-CoA delta isomerase ( 364) 2387 525.4 8e-149
NP_996667 (OMIM: 608024) enoyl-CoA delta isomerase ( 394) 2387 525.4 8.6e-149
XP_016865659 (OMIM: 608024) PREDICTED: enoyl-CoA d ( 334) 1551 344.6 1.9e-94
XP_006715020 (OMIM: 608024) PREDICTED: enoyl-CoA d ( 364) 1551 344.7 2e-94
NP_001137442 (OMIM: 603778) chromodomain Y-like pr ( 412) 645 148.9 2e-35
NP_001137443 (OMIM: 603778) chromodomain Y-like pr ( 412) 645 148.9 2e-35
XP_011513299 (OMIM: 603778) PREDICTED: chromodomai ( 522) 645 148.9 2.4e-35
NP_004815 (OMIM: 603778) chromodomain Y-like prote ( 544) 645 149.0 2.4e-35
NP_733841 (OMIM: 400016,415000) testis-specific ch ( 540) 643 148.5 3.3e-35
NP_004671 (OMIM: 400016,415000) testis-specific ch ( 554) 635 146.8 1.1e-34
NP_004816 (OMIM: 400018,415000) testis-specific ch ( 541) 620 143.6 1e-33
XP_011529814 (OMIM: 400016,415000) PREDICTED: test ( 470) 525 123.0 1.4e-27
NP_001389 (OMIM: 600696) delta(3,5)-Delta(2,4)-die ( 328) 284 70.8 5.1e-12
XP_016872395 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 422) 255 64.6 4.7e-10
XP_016872388 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 457) 255 64.6 5e-10
XP_016872387 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 466) 255 64.6 5.1e-10
XP_016872386 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 468) 255 64.6 5.1e-10
NP_001035938 (OMIM: 616618) acyl-CoA-binding domai ( 490) 255 64.6 5.3e-10
XP_016872385 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 499) 255 64.6 5.4e-10
XP_006717598 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 501) 255 64.6 5.4e-10
XP_016872384 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 510) 255 64.6 5.5e-10
XP_016872383 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 521) 255 64.6 5.6e-10
NP_001258441 (OMIM: 616618) acyl-CoA-binding domai ( 523) 255 64.7 5.6e-10
NP_663736 (OMIM: 616618) acyl-CoA-binding domain-c ( 525) 255 64.7 5.6e-10
XP_016872382 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 530) 255 64.7 5.7e-10
XP_016872381 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 532) 255 64.7 5.7e-10
XP_016872380 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 534) 255 64.7 5.7e-10
XP_006717594 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 536) 255 64.7 5.7e-10
XP_016872378 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 541) 255 64.7 5.8e-10
XP_016872379 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 541) 255 64.7 5.8e-10
XP_006717593 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 543) 255 64.7 5.8e-10
XP_016872377 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 545) 255 64.7 5.8e-10
XP_016872376 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 552) 255 64.7 5.8e-10
XP_016872375 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 589) 255 64.7 6.1e-10
XP_016872374 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 598) 255 64.7 6.2e-10
XP_006717591 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 600) 255 64.7 6.2e-10
XP_016872373 (OMIM: 616618) PREDICTED: acyl-CoA-bi ( 609) 255 64.7 6.3e-10
NP_004083 (OMIM: 602292,616277) enoyl-CoA hydratas ( 290) 250 63.4 7.5e-10
NP_001171514 (OMIM: 125950) acyl-CoA-binding prote ( 97) 234 59.6 3.5e-09
NP_001073331 (OMIM: 125950) acyl-CoA-binding prote ( 87) 233 59.3 3.8e-09
NP_001171512 (OMIM: 125950) acyl-CoA-binding prote ( 129) 228 58.4 1.1e-08
NP_001171488 (OMIM: 125950) acyl-CoA-binding prote ( 148) 228 58.4 1.2e-08
NP_001269563 (OMIM: 125950) acyl-CoA-binding prote ( 104) 225 57.6 1.4e-08
NP_065438 (OMIM: 125950) acyl-CoA-binding protein ( 104) 225 57.6 1.4e-08
NP_001269564 (OMIM: 125950) acyl-CoA-binding prote ( 104) 225 57.6 1.4e-08
NP_001171513 (OMIM: 125950) acyl-CoA-binding prote ( 104) 225 57.6 1.4e-08
NP_001269562 (OMIM: 125950) acyl-CoA-binding prote ( 104) 225 57.6 1.4e-08
NP_001073332 (OMIM: 125950) acyl-CoA-binding prote ( 88) 222 56.9 2e-08
NP_115736 (OMIM: 616352) acyl-CoA-binding domain-c ( 282) 227 58.4 2.3e-08
>>NP_001159482 (OMIM: 608024) enoyl-CoA delta isomerase (364 aa)
initn: 2387 init1: 2387 opt: 2387 Z-score: 2792.8 bits: 525.4 E(85289): 8e-149
Smith-Waterman score: 2387; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)
10 20 30 40 50 60
pF1KE2 MNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 WTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSR
310 320 330 340 350 360
pF1KE2 KSKL
::::
NP_001 KSKL
>>NP_006108 (OMIM: 608024) enoyl-CoA delta isomerase 2, (364 aa)
initn: 2387 init1: 2387 opt: 2387 Z-score: 2792.8 bits: 525.4 E(85289): 8e-149
Smith-Waterman score: 2387; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)
10 20 30 40 50 60
pF1KE2 MNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 WTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 WTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSR
310 320 330 340 350 360
pF1KE2 KSKL
::::
NP_006 KSKL
>>NP_996667 (OMIM: 608024) enoyl-CoA delta isomerase 2, (394 aa)
initn: 2387 init1: 2387 opt: 2387 Z-score: 2792.3 bits: 525.4 E(85289): 8.6e-149
Smith-Waterman score: 2387; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:31-394)
10 20 30
pF1KE2 MNRTAMRASQKDFENSMNQVKLLKKDPGNE
::::::::::::::::::::::::::::::
NP_996 MAMAYLAWRLARRSCPSSLQVTSFPVVQLHMNRTAMRASQKDFENSMNQVKLLKKDPGNE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE2 VKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 VKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE2 SLESSSQVEPGTDRKSTGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 SLESSSQVEPGTDRKSTGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAAS
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE2 KDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 KDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE2 VVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 VVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEML
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE2 IFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 IFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKL
310 320 330 340 350 360
340 350 360
pF1KE2 HAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL
::::::::::::::::::::::::::::::::::
NP_996 HAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL
370 380 390
>>XP_016865659 (OMIM: 608024) PREDICTED: enoyl-CoA delta (334 aa)
initn: 1540 init1: 1540 opt: 1551 Z-score: 1816.7 bits: 344.6 E(85289): 1.9e-94
Smith-Waterman score: 2104; 91.8% identity (91.8% similar) in 364 aa overlap (1-364:1-334)
10 20 30 40 50 60
pF1KE2 MNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 TKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRAT---
190 200 210 220 230
250 260 270 280 290 300
pF1KE2 PFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEV
:::::::::::::::::::::::::::::::::
XP_016 ---------------------------EMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEV
240 250 260 270
310 320 330 340 350 360
pF1KE2 WTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSR
280 290 300 310 320 330
pF1KE2 KSKL
::::
XP_016 KSKL
>>XP_006715020 (OMIM: 608024) PREDICTED: enoyl-CoA delta (364 aa)
initn: 1540 init1: 1540 opt: 1551 Z-score: 1816.2 bits: 344.7 E(85289): 2e-94
Smith-Waterman score: 2104; 91.8% identity (91.8% similar) in 364 aa overlap (1-364:31-364)
10 20 30
pF1KE2 MNRTAMRASQKDFENSMNQVKLLKKDPGNE
::::::::::::::::::::::::::::::
XP_006 MAMAYLAWRLARRSCPSSLQVTSFPVVQLHMNRTAMRASQKDFENSMNQVKLLKKDPGNE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE2 VKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE2 SLESSSQVEPGTDRKSTGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLESSSQVEPGTDRKSTGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAAS
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE2 KDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE2 VVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEML
::::::::::::::::::::::::::: :::
XP_006 VVNGPAVGISVTLLGLFDAVYASDRAT------------------------------EML
250 260 270
280 290 300 310 320 330
pF1KE2 IFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKL
280 290 300 310 320 330
340 350 360
pF1KE2 HAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL
::::::::::::::::::::::::::::::::::
XP_006 HAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL
340 350 360
>>NP_001137442 (OMIM: 603778) chromodomain Y-like protei (412 aa)
initn: 612 init1: 612 opt: 645 Z-score: 757.1 bits: 148.9 E(85289): 2e-35
Smith-Waterman score: 645; 39.0% identity (76.4% similar) in 254 aa overlap (109-361:155-408)
80 90 100 110 120 130
pF1KE2 QNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGITKIMFN-RPKKKNAINTE
.. .:: ..::.:.:... . ...:..: :
NP_001 SKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPE
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE2 MYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREF
...:.. ::..:. ::: ...:.. :. . : :. : .... . : .:.:
NP_001 VMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNF
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE2 VGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTF
:. ::.: ::.:..:::::.:.....: : :.:.:...: :.::.. .::::.:::. :
NP_001 VNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMF
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE2 PKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRI
::::. :.:.:::. :.:::: :::..:::..:: .:: .:: .:.: .:. : .:.
NP_001 PKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEE
310 320 330 340 350 360
320 330 340 350 360
pF1KE2 SKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL
:: ..: . .:. .: .::.::. : : . ......:.::
NP_001 SKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF
370 380 390 400 410
>>NP_001137443 (OMIM: 603778) chromodomain Y-like protei (412 aa)
initn: 612 init1: 612 opt: 645 Z-score: 757.1 bits: 148.9 E(85289): 2e-35
Smith-Waterman score: 645; 39.0% identity (76.4% similar) in 254 aa overlap (109-361:155-408)
80 90 100 110 120 130
pF1KE2 QNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGITKIMFN-RPKKKNAINTE
.. .:: ..::.:.:... . ...:..: :
NP_001 SKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPE
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE2 MYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREF
...:.. ::..:. ::: ...:.. :. . : :. : .... . : .:.:
NP_001 VMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNF
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE2 VGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTF
:. ::.: ::.:..:::::.:.....: : :.:.:...: :.::.. .::::.:::. :
NP_001 VNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMF
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE2 PKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRI
::::. :.:.:::. :.:::: :::..:::..:: .:: .:: .:.: .:. : .:.
NP_001 PKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEE
310 320 330 340 350 360
320 330 340 350 360
pF1KE2 SKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL
:: ..: . .:. .: .::.::. : : . ......:.::
NP_001 SKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF
370 380 390 400 410
>>XP_011513299 (OMIM: 603778) PREDICTED: chromodomain Y- (522 aa)
initn: 612 init1: 612 opt: 645 Z-score: 755.7 bits: 148.9 E(85289): 2.4e-35
Smith-Waterman score: 645; 39.0% identity (76.4% similar) in 254 aa overlap (109-361:265-518)
80 90 100 110 120 130
pF1KE2 QNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGITKIMFN-RPKKKNAINTE
.. .:: ..::.:.:... . ...:..: :
XP_011 SKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPE
240 250 260 270 280 290
140 150 160 170 180 190
pF1KE2 MYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREF
...:.. ::..:. ::: ...:.. :. . : :. : .... . : .:.:
XP_011 VMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNF
300 310 320 330 340 350
200 210 220 230 240 250
pF1KE2 VGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTF
:. ::.: ::.:..:::::.:.....: : :.:.:...: :.::.. .::::.:::. :
XP_011 VNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMF
360 370 380 390 400 410
260 270 280 290 300 310
pF1KE2 PKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRI
::::. :.:.:::. :.:::: :::..:::..:: .:: .:: .:.: .:. : .:.
XP_011 PKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEE
420 430 440 450 460 470
320 330 340 350 360
pF1KE2 SKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL
:: ..: . .:. .: .::.::. : : . ......:.::
XP_011 SKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF
480 490 500 510 520
>>NP_004815 (OMIM: 603778) chromodomain Y-like protein i (544 aa)
initn: 612 init1: 612 opt: 645 Z-score: 755.5 bits: 149.0 E(85289): 2.4e-35
Smith-Waterman score: 645; 39.0% identity (76.4% similar) in 254 aa overlap (109-361:287-540)
80 90 100 110 120 130
pF1KE2 QNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGITKIMFN-RPKKKNAINTE
.. .:: ..::.:.:... . ...:..: :
NP_004 SKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPE
260 270 280 290 300 310
140 150 160 170 180 190
pF1KE2 MYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREF
...:.. ::..:. ::: ...:.. :. . : :. : .... . : .:.:
NP_004 VMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNF
320 330 340 350 360 370
200 210 220 230 240 250
pF1KE2 VGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTF
:. ::.: ::.:..:::::.:.....: : :.:.:...: :.::.. .::::.:::. :
NP_004 VNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMF
380 390 400 410 420 430
260 270 280 290 300 310
pF1KE2 PKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRI
::::. :.:.:::. :.:::: :::..:::..:: .:: .:: .:.: .:. : .:.
NP_004 PKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEE
440 450 460 470 480 490
320 330 340 350 360
pF1KE2 SKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL
:: ..: . .:. .: .::.::. : : . ......:.::
NP_004 SKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF
500 510 520 530 540
>>NP_733841 (OMIM: 400016,415000) testis-specific chromo (540 aa)
initn: 613 init1: 569 opt: 643 Z-score: 753.2 bits: 148.5 E(85289): 3.3e-35
Smith-Waterman score: 643; 33.9% identity (67.5% similar) in 342 aa overlap (28-361:196-536)
10 20 30 40 50
pF1KE2 MNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQ------ATEGPCNMPK
: . : ... :..: :. . . .
NP_733 AADQQDTVVFKVTEGKLLRDPLSRPGAEQTGIQNKTQIHPLMSQMSGSVTASMATGSATR
170 180 190 200 210 220
60 70 80 90 100 110
pF1KE2 PGVFDLINKAKWDAWNALG-SLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDRKSTGFE
:. ::. .. . . :.:. . : . : .: ... . :. :: ..
NP_733 KGIVVLIDPLAANGTTDMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESAST-YR
230 240 250 260 270 280
120 130 140 150 160
pF1KE2 TLVVTSEDGITKIMFN-RPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSG
.:: .:::.:.:... : .:::.:::. .::. ::..:. ::: ...... :. . :
NP_733 DIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCG
290 300 310 320 330 340
170 180 190 200 210 220
pF1KE2 NDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDA
:. :. .. . . . . ...::. ::.: ::... :::::.:.....: : :
NP_733 LDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL
350 360 370 380 390 400
230 240 250 260 270 280
pF1KE2 VYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTE
:.:...: :.::.. .::::.:::: ::::.:. :.:.:::: :.:::: ::::.:::..
NP_733 VWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ
410 420 430 440 450 460
290 300 310 320 330 340
pF1KE2 VFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDE
:: .:: .:: ..: .:. : .:. : ..: . .:. .: .::.::. : : .
NP_733 VFLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQ
470 480 490 500 510 520
350 360
pF1KE2 CTNAVVNFLSRKSKL
....... :
NP_733 GIESMLKYVENKIDEF
530 540
364 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 20:27:32 2016 done: Mon Nov 7 20:27:33 2016
Total Scan time: 6.950 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]