Result of FASTA (omim) for
pFN21AE2451
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2451, 378 aa
1>>>pF1KE2451 378 - 378 aa - 378 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6736+/-0.000409; mu= -0.1791+/- 0.025
mean_var=154.7840+/-30.421, 0's: 0 Z-trim(115.9): 60 B-trim: 72 in 2/56
Lambda= 0.103089
statistics sampled from 26624 (26682) to 26624 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.313), width: 16
Scan time: 7.540
The best scores are: opt bits E(85289)
NP_612388 (OMIM: 610096) T-cell immunoglobulin and ( 378) 2485 381.6 1.6e-105
XP_011532996 (OMIM: 610096) PREDICTED: T-cell immu ( 299) 1852 287.4 2.9e-77
NP_001140198 (OMIM: 610096) T-cell immunoglobulin ( 350) 1660 258.9 1.3e-68
XP_016865510 (OMIM: 610096) PREDICTED: T-cell immu ( 323) 1528 239.2 1e-62
XP_016864829 (OMIM: 147050,606518) PREDICTED: hepa ( 352) 449 78.8 2.2e-14
NP_036338 (OMIM: 147050,606518) hepatitis A virus ( 364) 449 78.8 2.3e-14
NP_001166864 (OMIM: 147050,606518) hepatitis A vir ( 364) 449 78.8 2.3e-14
NP_001295085 (OMIM: 147050,606518) hepatitis A vir ( 401) 449 78.8 2.5e-14
XP_016864828 (OMIM: 147050,606518) PREDICTED: hepa ( 400) 448 78.6 2.7e-14
NP_116171 (OMIM: 606652) hepatitis A virus cellula ( 301) 333 61.5 3e-09
XP_016879701 (OMIM: 609807) PREDICTED: CMRF35-like ( 309) 209 43.1 0.0011
XP_016879705 (OMIM: 609807) PREDICTED: CMRF35-like ( 240) 189 40.0 0.0068
XP_016879703 (OMIM: 609807) PREDICTED: CMRF35-like ( 263) 189 40.1 0.0074
XP_016879702 (OMIM: 609807) PREDICTED: CMRF35-like ( 266) 189 40.1 0.0075
NP_001276013 (OMIM: 609807) CMRF35-like molecule 1 ( 305) 188 39.9 0.0094
>>NP_612388 (OMIM: 610096) T-cell immunoglobulin and muc (378 aa)
initn: 2485 init1: 2485 opt: 2485 Z-score: 2015.2 bits: 381.6 E(85289): 1.6e-105
Smith-Waterman score: 2485; 99.7% identity (100.0% similar) in 378 aa overlap (1-378:1-378)
10 20 30 40 50 60
pF1KE2 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSSA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_612 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSSV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSVSSPQPGASDTAVPEQNKTTKTGQMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 ESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSVSSPQPGASDTAVPEQNKTTKTGQMD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 GIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYIGDSKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 GIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYIGDSKN
310 320 330 340 350 360
370
pF1KE2 VLNDVQHGREDEDGLFTL
::::::::::::::::::
NP_612 VLNDVQHGREDEDGLFTL
370
>>XP_011532996 (OMIM: 610096) PREDICTED: T-cell immunogl (299 aa)
initn: 1852 init1: 1852 opt: 1852 Z-score: 1508.1 bits: 287.4 E(85289): 2.9e-77
Smith-Waterman score: 1852; 99.6% identity (100.0% similar) in 281 aa overlap (1-281:1-281)
10 20 30 40 50 60
pF1KE2 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSSA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_011 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSSV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSVSSPQPGASDTAVPEQNKTTKTGQMD
:::::::::::::::::::::::::::::::::::::::::
XP_011 ESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSVSSPQPGEMSSHHVAQAGLKSLGLK
250 260 270 280 290
310 320 330 340 350 360
pF1KE2 GIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYIGDSKN
>>NP_001140198 (OMIM: 610096) T-cell immunoglobulin and (350 aa)
initn: 1727 init1: 1660 opt: 1660 Z-score: 1352.6 bits: 258.9 E(85289): 1.3e-68
Smith-Waterman score: 2223; 92.3% identity (92.6% similar) in 378 aa overlap (1-378:1-350)
10 20 30 40 50 60
pF1KE2 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSSA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSSV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSVSSPQPGASDTAVPEQNKTTKTGQMD
::::::::::::: :::::::::::::::::::
NP_001 ESTSADTVLLTSK----------------------------ASDTAVPEQNKTTKTGQMD
250 260 270
310 320 330 340 350 360
pF1KE2 GIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYIGDSKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYIGDSKN
280 290 300 310 320 330
370
pF1KE2 VLNDVQHGREDEDGLFTL
::::::::::::::::::
NP_001 VLNDVQHGREDEDGLFTL
340 350
>>XP_016865510 (OMIM: 610096) PREDICTED: T-cell immunogl (323 aa)
initn: 1591 init1: 1524 opt: 1528 Z-score: 1247.1 bits: 239.2 E(85289): 1e-62
Smith-Waterman score: 2014; 85.4% identity (85.4% similar) in 378 aa overlap (1-378:1-323)
10 20 30 40 50 60
pF1KE2 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSSA
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTA--------------
190 200 210 220
250 260 270 280 290 300
pF1KE2 ESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSVSSPQPGASDTAVPEQNKTTKTGQMD
:::::::::::::::::::
XP_016 -----------------------------------------ASDTAVPEQNKTTKTGQMD
230 240
310 320 330 340 350 360
pF1KE2 GIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYIGDSKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYIGDSKN
250 260 270 280 290 300
370
pF1KE2 VLNDVQHGREDEDGLFTL
::::::::::::::::::
XP_016 VLNDVQHGREDEDGLFTL
310 320
>>XP_016864829 (OMIM: 147050,606518) PREDICTED: hepatiti (352 aa)
initn: 357 init1: 357 opt: 449 Z-score: 379.2 bits: 78.8 E(85289): 2.2e-14
Smith-Waterman score: 449; 37.5% identity (60.5% similar) in 256 aa overlap (33-281:29-272)
10 20 30 40 50 60
pF1KE2 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS
: ::::: ::. .::::.. .:
XP_016 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND
:..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: :::::
XP_016 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND
60 70 80 90 100 110
130 140 150 160 170
pF1KE2 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL
.::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... :
XP_016 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP--
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 TTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSW
:: : : :... :.. : :. .: .: . : : : . : .. :: :
XP_016 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPS-SP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 SSAESTSADTVLLTSKESKVWDLPSTSHVSMWKT--SDSVSSPQPGASDTAVPEQNKTTK
. ::. :. .. . :..: . . : .:.:. . :
XP_016 QPAETHP------TTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHS
240 250 260 270 280
300 310 320 330 340 350
pF1KE2 TGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYI
XP_016 LLTANTTKGIYAGVCISVLVLLALLGVIIAKSTLEMLGKKLDLVHRWRNELHTQGLLCCP
290 300 310 320 330 340
>>NP_036338 (OMIM: 147050,606518) hepatitis A virus cell (364 aa)
initn: 357 init1: 357 opt: 449 Z-score: 379.0 bits: 78.8 E(85289): 2.3e-14
Smith-Waterman score: 449; 37.5% identity (60.5% similar) in 256 aa overlap (33-281:29-272)
10 20 30 40 50 60
pF1KE2 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS
: ::::: ::. .::::.. .:
NP_036 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND
:..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: :::::
NP_036 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND
60 70 80 90 100 110
130 140 150 160 170
pF1KE2 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL
.::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... :
NP_036 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP--
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 TTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSW
:: : : :... :.. : :. .: .: . : : : . : .. :: :
NP_036 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPS-SP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 SSAESTSADTVLLTSKESKVWDLPSTSHVSMWKT--SDSVSSPQPGASDTAVPEQNKTTK
. ::. :. .. . :..: . . : .:.:. . :
NP_036 QPAETHP------TTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHS
240 250 260 270 280
300 310 320 330 340 350
pF1KE2 TGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYI
NP_036 LLTANTTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEK
290 300 310 320 330 340
>>NP_001166864 (OMIM: 147050,606518) hepatitis A virus c (364 aa)
initn: 357 init1: 357 opt: 449 Z-score: 379.0 bits: 78.8 E(85289): 2.3e-14
Smith-Waterman score: 449; 37.5% identity (60.5% similar) in 256 aa overlap (33-281:29-272)
10 20 30 40 50 60
pF1KE2 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS
: ::::: ::. .::::.. .:
NP_001 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND
:..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: :::::
NP_001 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND
60 70 80 90 100 110
130 140 150 160 170
pF1KE2 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL
.::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... :
NP_001 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP--
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 TTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSW
:: : : :... :.. : :. .: .: . : : : . : .. :: :
NP_001 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPS-SP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 SSAESTSADTVLLTSKESKVWDLPSTSHVSMWKT--SDSVSSPQPGASDTAVPEQNKTTK
. ::. :. .. . :..: . . : .:.:. . :
NP_001 QPAETHP------TTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHS
240 250 260 270 280
300 310 320 330 340 350
pF1KE2 TGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYI
NP_001 LLTANTTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEK
290 300 310 320 330 340
>>NP_001295085 (OMIM: 147050,606518) hepatitis A virus c (401 aa)
initn: 357 init1: 357 opt: 449 Z-score: 378.3 bits: 78.8 E(85289): 2.5e-14
Smith-Waterman score: 449; 37.5% identity (60.5% similar) in 256 aa overlap (33-281:29-272)
10 20 30 40 50 60
pF1KE2 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS
: ::::: ::. .::::.. .:
NP_001 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND
:..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: :::::
NP_001 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND
60 70 80 90 100 110
130 140 150 160 170
pF1KE2 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL
.::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... :
NP_001 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP--
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 TTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSW
:: : : :... :.. : :. .: .: . : : : . : .. :: :
NP_001 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPS-SP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 SSAESTSADTVLLTSKESKVWDLPSTSHVSMWKT--SDSVSSPQPGASDTAVPEQNKTTK
. ::. :. .. . :..: . . : .:.:. . :
NP_001 QPAETHP------TTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHS
240 250 260 270 280
300 310 320 330 340 350
pF1KE2 TGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYI
NP_001 LLTANTTKGIYAGVCISVLVLLALLGVIIAKMFHLAAFKLKLCKMQLKRKSKQKTISTLR
290 300 310 320 330 340
>>XP_016864828 (OMIM: 147050,606518) PREDICTED: hepatiti (400 aa)
initn: 357 init1: 357 opt: 448 Z-score: 377.5 bits: 78.6 E(85289): 2.7e-14
Smith-Waterman score: 451; 37.2% identity (63.6% similar) in 250 aa overlap (33-259:29-274)
10 20 30 40 50 60
pF1KE2 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS
: ::::: ::. .::::.. .:
XP_016 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND
:..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: :::::
XP_016 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND
60 70 80 90 100 110
130 140 150 160 170
pF1KE2 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPA-------ALPTT
.::.: :.. ..:: .:: :: ::.:: :::: :::.:. ..:::
XP_016 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIPTT
120 130 140 150 160 170
180 190 200 210
pF1KE2 VVTTPDLTTGTPLQM-TTIAVFTTANTCLSLTPST------LP----EEATGLLTPEPSK
... .:..: .. :: .. ::... .. : :: :: : ::. .:.:..
XP_016 TTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPATSPSSPQPAE
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE2 EGPILTAESETVLPSDSWSSAESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSVSSPQ
: . :..: . .:... .. :... .:.
XP_016 THPTTLQGAIRREPTSSPLYSYTTDGNDTVTESSDG-LWNNNQTQLFLEHSLLTANTTKG
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE2 PGASDTAVPEQNKTTKTGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGK
XP_016 IYAGVCISVLVLLALLGVIIAKMFHLAAFKLKLCKMQLKRKSKQKTISTLRIVFMPRTKT
300 310 320 330 340 350
>>NP_116171 (OMIM: 606652) hepatitis A virus cellular re (301 aa)
initn: 276 init1: 199 opt: 333 Z-score: 287.1 bits: 61.5 E(85289): 3e-09
Smith-Waterman score: 333; 35.6% identity (60.3% similar) in 174 aa overlap (17-189:15-180)
10 20 30 40 50
pF1KE2 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSH-NSNSMCWGKDQC
: : .::. .:. . :::.:. . : .:::: :
NP_116 MFSHLPFDCVLLLLLLLLTRSSEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGAC
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 PYSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGW
: : ....::: : .. ...: :.: . .::::::: : . .:::.:::::..::
NP_116 PVFECGNVVLRTD-ERDVNYWTSRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE2 FNDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTT
.:: :.:..: .. :..: : : : :.. : :: : . . ::..
NP_116 MNDEKFNLKLVIKPAKVTP---APTRQRDFTAAFPRMLTTRGHGPAETQT-LGSLPDINL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 GTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSS
:..:.:
NP_116 ---TQISTLANELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHS
180 190 200 210 220 230
378 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:24:29 2016 done: Thu Nov 3 12:24:30 2016
Total Scan time: 7.540 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]