Result of FASTA (ccds) for
pFN21AE2433
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2433, 1304 aa
1>>>pF1KE2433 1304 - 1304 aa - 1304 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.1460+/-0.00133; mu= 0.6250+/- 0.079
mean_var=253.4653+/-52.251, 0's: 0 Z-trim(108.0): 23 B-trim: 67 in 1/50
Lambda= 0.080559
statistics sampled from 9944 (9954) to 9944 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.306), width: 16
Scan time: 5.360
The best scores are: opt bits E(32554)
CCDS33356.1 SF3B1 gene_id:23451|Hs108|chr2 (1304) 8685 1024.1 0
CCDS82550.1 SF3B1 gene_id:23451|Hs108|chr2 ( 154) 929 122.1 1.1e-27
CCDS46479.1 SF3B1 gene_id:23451|Hs108|chr2 ( 144) 921 121.2 2e-27
>>CCDS33356.1 SF3B1 gene_id:23451|Hs108|chr2 (1304 aa)
initn: 8685 init1: 8685 opt: 8685 Z-score: 5468.3 bits: 1024.1 E(32554): 0
Smith-Waterman score: 8685; 100.0% identity (100.0% similar) in 1304 aa overlap (1-1304:1-1304)
10 20 30 40 50 60
pF1KE2 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE2 DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE2 ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE2 QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE2 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE2 TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE2 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE2 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE2 GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300
pF1KE2 VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
1270 1280 1290 1300
>>CCDS82550.1 SF3B1 gene_id:23451|Hs108|chr2 (154 aa)
initn: 987 init1: 929 opt: 929 Z-score: 610.3 bits: 122.1 E(32554): 1.1e-27
Smith-Waterman score: 929; 97.9% identity (99.3% similar) in 143 aa overlap (1-143:1-143)
10 20 30 40 50 60
pF1KE2 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
:::::::::::::::::::.. :
CCDS82 KHRRTMIISPERLDPFADGNSFPLFYKYSEIYLY
130 140 150
>>CCDS46479.1 SF3B1 gene_id:23451|Hs108|chr2 (144 aa)
initn: 921 init1: 921 opt: 921 Z-score: 605.7 bits: 121.2 E(32554): 2e-27
Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KE2 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
:::::::::::::::::::
CCDS46 KHRRTMIISPERLDPFADGFYSAA
130 140
1304 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 20:14:03 2016 done: Mon Nov 7 20:14:04 2016
Total Scan time: 5.360 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]