FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2423, 278 aa
  1>>>pF1KE2423 278 - 278 aa - 278 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2211+/-0.000819; mu= 12.1006+/- 0.049
 mean_var=100.8537+/-19.676, 0's: 0 Z-trim(109.4): 13  B-trim: 86 in 1/52
 Lambda= 0.127711
 statistics sampled from 10877 (10882) to 10877 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.334), width:  16
 Scan time:  2.020

The best scores are:                                      opt bits E(32554)
CCDS8293.1 TAF1D gene_id:79101|Hs108|chr11         ( 278) 1828 346.8   1e-95


>>CCDS8293.1 TAF1D gene_id:79101|Hs108|chr11              (278 aa)
 initn: 1828 init1: 1828 opt: 1828  Z-score: 1831.9  bits: 346.8 E(32554): 1e-95
Smith-Waterman score: 1828; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)

               10        20        30        40        50        60
pF1KE2 MDKSGIDSLDHVTSDAVELANRSDNSSDSSLFKTQCIPYSPKGEKRNPIRKFVRTPESVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MDKSGIDSLDHVTSDAVELANRSDNSSDSSLFKTQCIPYSPKGEKRNPIRKFVRTPESVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DKKKQFRSRGSGFPFLESENEKNAPWRKILTFEQAVARGFFNYIEKLKYEHHLKESLKQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DKKKQFRSRGSGFPFLESENEKNAPWRKILTFEQAVARGFFNYIEKLKYEHHLKESLKQM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 NVGEDLENEDFDSRRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NVGEDLENEDFDSRRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSE
              190       200       210       220       230       240

              250       260       270        
pF1KE2 FPVRLSVYLEEEDITEEAALSKKRATKAKNTGQRGLKM
       ::::::::::::::::::::::::::::::::::::::
CCDS82 FPVRLSVYLEEEDITEEAALSKKRATKAKNTGQRGLKM
              250       260       270        




278 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:44:10 2016 done: Mon Nov  7 19:44:10 2016
 Total Scan time:  2.020 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]