Result of FASTA (ccds) for
pFN21AE2420
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2420, 2005 aa
1>>>pF1KE2420 2005 - 2005 aa - 2005 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5090+/-0.00111; mu= 17.8998+/- 0.067
mean_var=72.9771+/-14.444, 0's: 0 Z-trim(102.5): 40 B-trim: 0 in 0/49
Lambda= 0.150135
statistics sampled from 6965 (6977) to 6965 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.561), E-opt: 0.2 (0.214), width: 16
Scan time: 4.610
The best scores are: opt bits E(32554)
CCDS45822.1 SMCHD1 gene_id:23347|Hs108|chr18 (2005) 13354 2902.9 0
>>CCDS45822.1 SMCHD1 gene_id:23347|Hs108|chr18 (2005 aa)
initn: 13354 init1: 13354 opt: 13354 Z-score: 15615.3 bits: 2902.9 E(32554): 0
Smith-Waterman score: 13354; 99.9% identity (100.0% similar) in 2005 aa overlap (1-2005:1-2005)
10 20 30 40 50 60
pF1KE2 MAAADGGGPGGASVGTEEDGGGVGHRTVYLFDRREKESELGDRPLQVGERSDYAGFRACV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAAADGGGPGGASVGTEEDGGGVGHRTVYLFDRREKESELGDRPLQVGERSDYAGFRACV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 DDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 EIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDEDDCFILEKAARGKRPIFECFWNGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDEDDCFILEKAARGKRPIFECFWNGRL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 VRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS45 VRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRI
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE2 NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE2 FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITNGPNCVIRGVTAKGPVNSCQGK
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS45 FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE2 NYNLKVTLPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NYNLKVTLPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNI
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE2 TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE2 VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE2 INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE2 VRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE2 LDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLI
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE2 DWPELKESIPVINGRDLQNPIIVQLCDQWDNPAPVQHVKISLTKASNLKLMPSNQQHKTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DWPELKESIPVINGRDLQNPIIVQLCDQWDNPAPVQHVKISLTKASNLKLMPSNQQHKTD
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE2 EKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPIIKLMILPDPEKPVRLNVKYDKDAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPIIKLMILPDPEKPVRLNVKYDKDAS
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KE2 FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDND
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KE2 KEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILNSEQVIVEVLPNQPVKLVPKIKPPTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILNSEQVIVEVLPNQPVKLVPKIKPPTP
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KE2 AVSNVRSVASRTLVRDLHLSITDDYDNHTGIDLVGTIIATIKGSNEEDTDTPLFIGKVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AVSNVRSVASRTLVRDLHLSITDDYDNHTGIDLVGTIIATIKGSNEEDTDTPLFIGKVRT
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KE2 LEFPFVNGSAEIMSLVLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LEFPFVNGSAEIMSLVLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQ
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KE2 QQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIP
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KE2 TTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KE2 ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRSLPHFRNGKLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRSLPHFRNGKLY
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KE2 FKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KE2 TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLD
1870 1880 1890 1900 1910 1920
1930 1940 1950 1960 1970 1980
pF1KE2 SVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVETT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVETT
1930 1940 1950 1960 1970 1980
1990 2000
pF1KE2 DCPVPPKRMRREATRQNRIITKTDV
:::::::::::::::::::::::::
CCDS45 DCPVPPKRMRREATRQNRIITKTDV
1990 2000
2005 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 19:45:33 2016 done: Mon Nov 7 19:45:34 2016
Total Scan time: 4.610 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]