FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2414, 151 aa
  1>>>pF1KE2414 151 - 151 aa - 151 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9264+/-0.000736; mu= -0.9727+/- 0.045
 mean_var=222.3820+/-44.721, 0's: 0 Z-trim(117.7): 4  B-trim: 0 in 0/55
 Lambda= 0.086005
 statistics sampled from 18510 (18513) to 18510 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.846), E-opt: 0.2 (0.569), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS5526.1 CHCHD2 gene_id:51142|Hs108|chr7         ( 151) 1030 138.5 1.5e-33
CCDS13815.1 CHCHD10 gene_id:400916|Hs108|chr22     ( 142)  517 74.8 2.1e-14
CCDS77659.1 CHCHD10 gene_id:400916|Hs108|chr22     ( 149)  512 74.2 3.3e-14


>>CCDS5526.1 CHCHD2 gene_id:51142|Hs108|chr7              (151 aa)
 initn: 1030 init1: 1030 opt: 1030  Z-score: 715.7  bits: 138.5 E(32554): 1.5e-33
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KE2 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQ
               70        80        90       100       110       120

              130       140       150 
pF1KE2 FLECAQNQGDIKLCEGFNEVLKQCRLANGLA
       :::::::::::::::::::::::::::::::
CCDS55 FLECAQNQGDIKLCEGFNEVLKQCRLANGLA
              130       140       150 

>>CCDS13815.1 CHCHD10 gene_id:400916|Hs108|chr22          (142 aa)
 initn: 784 init1: 290 opt: 517  Z-score: 372.1  bits: 74.8 E(32554): 2.1e-14
Smith-Waterman score: 529; 57.2% identity (75.0% similar) in 152 aa overlap (1-151:1-139)

               10        20        30        40        50        60
pF1KE2 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA
       ::::::: .::   :::: :        :: :.:::  ::::.. . :   :::::::::
CCDS13 MPRGSRSAASR---PASR-P-------AAPSAHPPAHPPPSAAAPAPAPSGQPGLMAQMA
               10                   20        30        40         

               70        80        90       100       110          
pF1KE2 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQ-PCLYEIK
       ::::::::::::::..: :.::.:::::. ::..: .  : :  . :   :. :: :::.
CCDS13 TTAAGVAVGSAVGHVMGSALTGAFSGGSS-EPSQPAVQ-QAPTPAAPQPLQMGPCAYEIR
      50        60        70         80         90       100       

     120       130       140       150    
pF1KE2 QFLECAQNQGDIKLCEGFNEVLKQCRLANGLA   
       :::.:. .:.:..:::::.:.::::.  .::.   
CCDS13 QFLDCSTTQSDLSLCEGFSEALKQCKYYHGLSSLP
       110       120       130       140  

>>CCDS77659.1 CHCHD10 gene_id:400916|Hs108|chr22          (149 aa)
 initn: 635 init1: 280 opt: 512  Z-score: 368.4  bits: 74.2 E(32554): 3.3e-14
Smith-Waterman score: 524; 55.7% identity (72.2% similar) in 158 aa overlap (1-151:1-146)

               10        20        30        40        50        60
pF1KE2 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA
       ::::::: .::   :::: :        :: :.:::  ::::.. . :   :::::::::
CCDS77 MPRGSRSAASR---PASR-P-------AAPSAHPPAHPPPSAAAPAPAPSGQPGLMAQMA
               10                   20        30        40         

               70        80        90       100          110       
pF1KE2 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQ---EPQGTQPAQQQQ----P
       ::::::::::::::..: :.::.:::::. ::..: .       ::.  ::  :     :
CCDS77 TTAAGVAVGSAVGHVMGSALTGAFSGGSS-EPSQPAVQQPLALYPQAPTPAAPQPLQMGP
      50        60        70         80        90       100        

           120       130       140       150    
pF1KE2 CLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA   
       : :::.:::.:. .:.:..:::::.:.::::.  .::.   
CCDS77 CAYEIRQFLDCSTTQSDLSLCEGFSEALKQCKYYHGLSSLP
      110       120       130       140         




151 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:03:07 2016 done: Sat Nov  5 19:03:07 2016
 Total Scan time:  2.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]