FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2410, 286 aa
  1>>>pF1KE2410 286 - 286 aa - 286 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4407+/-0.000718; mu= 14.6785+/- 0.043
 mean_var=70.2408+/-14.163, 0's: 0 Z-trim(109.9): 12  B-trim: 642 in 1/51
 Lambda= 0.153031
 statistics sampled from 11193 (11200) to 11193 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.344), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS7906.1 ALKBH3 gene_id:221120|Hs108|chr11       ( 286) 2009 452.2  2e-127
CCDS31897.1 ALKBH2 gene_id:121642|Hs108|chr12      ( 261)  377 91.9 5.4e-19


>>CCDS7906.1 ALKBH3 gene_id:221120|Hs108|chr11            (286 aa)
 initn: 2009 init1: 2009 opt: 2009  Z-score: 2401.2  bits: 452.2 E(32554): 2e-127
Smith-Waterman score: 2009; 99.7% identity (100.0% similar) in 286 aa overlap (1-286:1-286)

               10        20        30        40        50        60
pF1KE2 MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 IREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 IREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 YRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGEYTYVERVKIPLD
       :::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS79 YRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLD
              190       200       210       220       230       240

              250       260       270       280      
pF1KE2 HGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 HGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW
              250       260       270       280      

>>CCDS31897.1 ALKBH2 gene_id:121642|Hs108|chr12           (261 aa)
 initn: 339 init1: 163 opt: 377  Z-score: 454.5  bits: 91.9 E(32554): 5.4e-19
Smith-Waterman score: 377; 37.0% identity (60.9% similar) in 192 aa overlap (91-277:67-256)

               70        80        90       100       110       120
pF1KE2 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG
                                     : :  .    ::: :...: ..: .   . 
CCDS31 TRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGAL
         40        50        60        70        80        90      

                 130         140       150       160       170     
pF1KE2 IREDIT---YQQPRLTAWYGE--LPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNS
        : ..    .. ::  : ::.  : ::.: .:. :.: : :::. .....   ::.::: 
CCDS31 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKP-WIPVLERIRDHVSGVTGQTFNF
        100       110       120       130        140       150     

         180       190       200       210       220       230     
pF1KE2 LLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGEYTYVERV
       .: : :..  : .  : :::  :.    :::.:::: : : .:.:   . ..    :  :
CCDS31 VLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDS-RGKSPSRRVAVV
         160       170       180       190       200        210    

         240       250       260       270       280      
pF1KE2 KIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW
       ..:: ::.::.:.  :.. : : .: . .   :::::::: .         
CCDS31 RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK    
          220       230       240       250       260     




286 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:23:24 2016 done: Sat Nov  5 19:23:24 2016
 Total Scan time:  2.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]