Result of FASTA (omim) for
pFN21AE2405
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2405, 393 aa
1>>>pF1KE2405 393 - 393 aa - 393 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3061+/-0.000399; mu= 7.2179+/- 0.025
mean_var=134.2754+/-27.274, 0's: 0 Z-trim(115.2): 167 B-trim: 1140 in 1/59
Lambda= 0.110682
statistics sampled from 25248 (25447) to 25248 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.298), width: 16
Scan time: 9.220
The best scores are: opt bits E(85289)
NP_062550 (OMIM: 612597) cytotoxic and regulatory ( 393) 2539 417.1 3.6e-116
XP_011541202 (OMIM: 612597) PREDICTED: cytotoxic a ( 342) 1788 297.2 4e-80
NP_001291711 (OMIM: 612597) cytotoxic and regulato ( 194) 1114 189.4 6.4e-48
XP_016872947 (OMIM: 605686) PREDICTED: cell adhesi ( 402) 320 62.8 1.7e-09
NP_001091987 (OMIM: 605686) cell adhesion molecule ( 414) 320 62.8 1.7e-09
XP_005271551 (OMIM: 605686) PREDICTED: cell adhesi ( 425) 320 62.8 1.8e-09
NP_055148 (OMIM: 605686) cell adhesion molecule 1 ( 442) 320 62.8 1.8e-09
NP_001287974 (OMIM: 605686) cell adhesion molecule ( 443) 320 62.8 1.8e-09
NP_001287973 (OMIM: 605686) cell adhesion molecule ( 453) 320 62.8 1.9e-09
NP_001120645 (OMIM: 609743) cell adhesion molecule ( 398) 319 62.6 1.9e-09
NP_001287972 (OMIM: 605686) cell adhesion molecule ( 471) 320 62.8 1.9e-09
XP_016872946 (OMIM: 605686) PREDICTED: cell adhesi ( 477) 320 62.8 1.9e-09
NP_067012 (OMIM: 609743) cell adhesion molecule 3 ( 432) 319 62.7 2e-09
XP_006713145 (OMIM: 609938) PREDICTED: cell adhesi ( 395) 295 58.8 2.6e-08
XP_016861552 (OMIM: 609938) PREDICTED: cell adhesi ( 397) 295 58.8 2.6e-08
NP_001161147 (OMIM: 609938) cell adhesion molecule ( 404) 295 58.8 2.7e-08
NP_001161146 (OMIM: 609938) cell adhesion molecule ( 435) 295 58.8 2.9e-08
XP_006713144 (OMIM: 609938) PREDICTED: cell adhesi ( 435) 295 58.8 2.9e-08
NP_694854 (OMIM: 609938) cell adhesion molecule 2 ( 437) 295 58.8 2.9e-08
XP_016861551 (OMIM: 609938) PREDICTED: cell adhesi ( 449) 295 58.8 2.9e-08
NP_001333439 (OMIM: 609743) cell adhesion molecule ( 352) 282 56.7 1e-07
XP_005258677 (OMIM: 609744) PREDICTED: cell adhesi ( 345) 223 47.3 6.8e-05
NP_660339 (OMIM: 609744) cell adhesion molecule 4 ( 388) 223 47.3 7.5e-05
XP_016881941 (OMIM: 609744) PREDICTED: cell adhesi ( 369) 216 46.2 0.00016
NP_002329 (OMIM: 603241) limbic system-associated ( 338) 204 44.2 0.00055
XP_011511142 (OMIM: 603241) PREDICTED: limbic syst ( 344) 204 44.2 0.00056
XP_016861872 (OMIM: 603241) PREDICTED: limbic syst ( 350) 204 44.2 0.00057
NP_001305844 (OMIM: 603241) limbic system-associat ( 361) 204 44.2 0.00058
XP_016873354 (OMIM: 607938) PREDICTED: neurotrimin ( 326) 194 42.6 0.0016
XP_005245362 (OMIM: 607428) PREDICTED: kin of IRRE ( 773) 200 43.8 0.0017
NP_001041674 (OMIM: 607938) neurotrimin isoform 2 ( 344) 194 42.6 0.0017
XP_005271639 (OMIM: 607938) PREDICTED: neurotrimin ( 355) 194 42.6 0.0017
XP_005271637 (OMIM: 607938) PREDICTED: neurotrimin ( 367) 194 42.7 0.0018
XP_016873344 (OMIM: 607938) PREDICTED: neurotrimin ( 373) 194 42.7 0.0018
XP_016873341 (OMIM: 607938) PREDICTED: neurotrimin ( 385) 194 42.7 0.0019
NP_001137531 (OMIM: 607938) neurotrimin isoform 4 ( 316) 191 42.1 0.0022
XP_016873353 (OMIM: 607938) PREDICTED: neurotrimin ( 325) 191 42.1 0.0022
XP_011541163 (OMIM: 607938) PREDICTED: neurotrimin ( 326) 191 42.1 0.0023
XP_016873350 (OMIM: 607938) PREDICTED: neurotrimin ( 335) 191 42.1 0.0023
XP_016873351 (OMIM: 607938) PREDICTED: neurotrimin ( 335) 191 42.1 0.0023
NP_057606 (OMIM: 607938) neurotrimin isoform 1 pre ( 344) 191 42.2 0.0024
XP_006718918 (OMIM: 607938) PREDICTED: neurotrimin ( 346) 191 42.2 0.0024
XP_016873347 (OMIM: 607938) PREDICTED: neurotrimin ( 346) 191 42.2 0.0024
XP_016873348 (OMIM: 607938) PREDICTED: neurotrimin ( 346) 191 42.2 0.0024
NP_001137530 (OMIM: 607938) neurotrimin isoform 3 ( 355) 191 42.2 0.0024
XP_016873345 (OMIM: 607938) PREDICTED: neurotrimin ( 358) 191 42.2 0.0024
XP_016873346 (OMIM: 607938) PREDICTED: neurotrimin ( 358) 191 42.2 0.0024
XP_005271638 (OMIM: 607938) PREDICTED: neurotrimin ( 367) 191 42.2 0.0025
XP_016873343 (OMIM: 607938) PREDICTED: neurotrimin ( 373) 191 42.2 0.0025
XP_016873342 (OMIM: 607938) PREDICTED: neurotrimin ( 376) 191 42.2 0.0025
>>NP_062550 (OMIM: 612597) cytotoxic and regulatory T-ce (393 aa)
initn: 2539 init1: 2539 opt: 2539 Z-score: 2206.6 bits: 417.1 E(85289): 3.6e-116
Smith-Waterman score: 2539; 100.0% identity (100.0% similar) in 393 aa overlap (1-393:1-393)
10 20 30 40 50 60
pF1KE2 MWWRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 MWWRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATPFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 NEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATPFK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PILEASVIRKQNGEEHVVLMCSTMRSKPPPQITWLLGNSMEVSGGTLHEFETDGKKCNTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 PILEASVIRKQNGEEHVVLMCSTMRSKPPPQITWLLGNSMEVSGGTLHEFETDGKKCNTT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 STLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFEDLVTDEETASDALERNSLSSQDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 STLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFEDLVTDEETASDALERNSLSSQDPQQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSFLIFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 PTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSFLIFI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 LFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMRCMNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 LFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMRCMNY
310 320 330 340 350 360
370 380 390
pF1KE2 ITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV
:::::::::::::::::::::::::::::::::
NP_062 ITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV
370 380 390
>>XP_011541202 (OMIM: 612597) PREDICTED: cytotoxic and r (342 aa)
initn: 1788 init1: 1788 opt: 1788 Z-score: 1559.4 bits: 297.2 E(85289): 4e-80
Smith-Waterman score: 2107; 87.0% identity (87.0% similar) in 393 aa overlap (1-393:1-342)
10 20 30 40 50 60
pF1KE2 MWWRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MWWRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATPFK
::::: ::::
XP_011 NEYPA---------------------------------------------------TPFK
130 140 150 160 170 180
pF1KE2 PILEASVIRKQNGEEHVVLMCSTMRSKPPPQITWLLGNSMEVSGGTLHEFETDGKKCNTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PILEASVIRKQNGEEHVVLMCSTMRSKPPPQITWLLGNSMEVSGGTLHEFETDGKKCNTT
70 80 90 100 110 120
190 200 210 220 230 240
pF1KE2 STLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFEDLVTDEETASDALERNSLSSQDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFEDLVTDEETASDALERNSLSSQDPQQ
130 140 150 160 170 180
250 260 270 280 290 300
pF1KE2 PTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSFLIFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSFLIFI
190 200 210 220 230 240
310 320 330 340 350 360
pF1KE2 LFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMRCMNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMRCMNY
250 260 270 280 290 300
370 380 390
pF1KE2 ITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV
:::::::::::::::::::::::::::::::::
XP_011 ITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV
310 320 330 340
>>NP_001291711 (OMIM: 612597) cytotoxic and regulatory T (194 aa)
initn: 1137 init1: 1105 opt: 1114 Z-score: 981.3 bits: 189.4 E(85289): 6.4e-48
Smith-Waterman score: 1114; 96.8% identity (97.3% similar) in 187 aa overlap (208-393:8-194)
180 190 200 210 220 230
pF1KE2 NTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFED-LVTDEETASDALERNSLSSQ
.:: : : ::::::::::::::::::::
NP_001 MWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQ
10 20 30
240 250 260 270 280 290
pF1KE2 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF
40 50 60 70 80 90
300 310 320 330 340 350
pF1KE2 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR
100 110 120 130 140 150
360 370 380 390
pF1KE2 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV
:::::::::::::::::::::::::::::::::::::
NP_001 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV
160 170 180 190
>>XP_016872947 (OMIM: 605686) PREDICTED: cell adhesion m (402 aa)
initn: 264 init1: 226 opt: 320 Z-score: 291.5 bits: 62.8 E(85289): 1.7e-09
Smith-Waterman score: 320; 30.1% identity (62.8% similar) in 183 aa overlap (23-205:9-189)
10 20 30 40 50 60
pF1KE2 MWWRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFL
:. .:: ::.. :..: .. .: .: :.:. ::..
XP_016 MGDGQNLFTKDVTVIEGEVATISCQVNKSDDSVIQLLNPNRQTIYF
10 20 30 40
70 80 90 100 110 120
pF1KE2 NEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATPFK
.. ::.:..:::. :...:.... ::...::: : : :.: . . . . ::. : .
XP_016 RDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQLYTDPPQESYTTITVLVPPRN
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 PILEASVIRKQNGEEHVVLMCSTMRSKPPPQITWLLGNSMEVSGGTLHEFETDGKKCNTT
... . .::: . . :..: ::: : :. ::. :..: . : .: ..
XP_016 LMIDIQKDTAVEGEE-IEVNCTAMASKPATTIRWFKGNT-ELKGKSEVEEWSDMYTVTSQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE2 STLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFEDLVTDEETASDALERNSLSSQDPQQ
: .: . : : ..: .. :
XP_016 LMLKVHKEDDGVPVICQVEHPAVTGNLQTQRYLEVQYKPQVHIQMTYPLQGLTREGDALE
170 180 190 200 210 220
>>NP_001091987 (OMIM: 605686) cell adhesion molecule 1 i (414 aa)
initn: 264 init1: 226 opt: 320 Z-score: 291.4 bits: 62.8 E(85289): 1.7e-09
Smith-Waterman score: 320; 30.1% identity (62.8% similar) in 183 aa overlap (23-205:49-229)
10 20 30 40 50
pF1KE2 MWWRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLT
:. .:: ::.. :..: .. .: .: :.
NP_001 AAPPGLRLRLLLLLFSAAALIPTGDGQNLFTKDVTVIEGEVATISCQVNKSDDSVIQLLN
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE2 PSGFTIFLNEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKV
:. ::.. .. ::.:..:::. :...:.... ::...::: : : :.: . . . .
NP_001 PNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQLYTDPPQESYTTI
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE2 IVLATPFKPILEASVIRKQNGEEHVVLMCSTMRSKPPPQITWLLGNSMEVSGGTLHEFET
::. : . ... . .::: . . :..: ::: : :. ::. :..: . : .
NP_001 TVLVPPRNLMIDIQKDTAVEGEE-IEVNCTAMASKPATTIRWFKGNT-ELKGKSEVEEWS
140 150 160 170 180 190
180 190 200 210 220 230
pF1KE2 DGKKCNTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFEDLVTDEETASDALERNS
: .. : .: . : : ..: .. :
NP_001 DMYTVTSQLMLKVHKEDDGVPVICQVEHPAVTGNLQTQRYLEVQYKPQVHIQMTYPLQGL
200 210 220 230 240 250
240 250 260 270 280 290
pF1KE2 LSSQDPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLT
NP_001 TREGDALELTCEAIGKPQPVMVTWVRVDDEMPQHAVLSGPNLFINNLNKTDNGTYRCEAS
260 270 280 290 300 310
>>XP_005271551 (OMIM: 605686) PREDICTED: cell adhesion m (425 aa)
initn: 264 init1: 226 opt: 320 Z-score: 291.2 bits: 62.8 E(85289): 1.8e-09
Smith-Waterman score: 320; 30.1% identity (62.8% similar) in 183 aa overlap (23-205:49-229)
10 20 30 40 50
pF1KE2 MWWRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLT
:. .:: ::.. :..: .. .: .: :.
XP_005 AAPPGLRLRLLLLLFSAAALIPTGDGQNLFTKDVTVIEGEVATISCQVNKSDDSVIQLLN
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE2 PSGFTIFLNEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKV
:. ::.. .. ::.:..:::. :...:.... ::...::: : : :.: . . . .
XP_005 PNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQLYTDPPQESYTTI
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE2 IVLATPFKPILEASVIRKQNGEEHVVLMCSTMRSKPPPQITWLLGNSMEVSGGTLHEFET
::. : . ... . .::: . . :..: ::: : :. ::. :..: . : .
XP_005 TVLVPPRNLMIDIQKDTAVEGEE-IEVNCTAMASKPATTIRWFKGNT-ELKGKSEVEEWS
140 150 160 170 180 190
180 190 200 210 220 230
pF1KE2 DGKKCNTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFEDLVTDEETASDALERNS
: .. : .: . : : ..: .. :
XP_005 DMYTVTSQLMLKVHKEDDGVPVICQVEHPAVTGNLQTQRYLEVQYKPQVHIQMTYPLQGL
200 210 220 230 240 250
240 250 260 270 280 290
pF1KE2 LSSQDPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLT
XP_005 TREGDALELTCEAIGKPQPVMVTWVRVDDEMPQHAVLSGPNLFINNLNKTDNGTYRCEAS
260 270 280 290 300 310
>>NP_055148 (OMIM: 605686) cell adhesion molecule 1 isof (442 aa)
initn: 264 init1: 226 opt: 320 Z-score: 290.9 bits: 62.8 E(85289): 1.8e-09
Smith-Waterman score: 320; 30.1% identity (62.8% similar) in 183 aa overlap (23-205:49-229)
10 20 30 40 50
pF1KE2 MWWRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLT
:. .:: ::.. :..: .. .: .: :.
NP_055 AAPPGLRLRLLLLLFSAAALIPTGDGQNLFTKDVTVIEGEVATISCQVNKSDDSVIQLLN
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE2 PSGFTIFLNEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKV
:. ::.. .. ::.:..:::. :...:.... ::...::: : : :.: . . . .
NP_055 PNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQLYTDPPQESYTTI
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE2 IVLATPFKPILEASVIRKQNGEEHVVLMCSTMRSKPPPQITWLLGNSMEVSGGTLHEFET
::. : . ... . .::: . . :..: ::: : :. ::. :..: . : .
NP_055 TVLVPPRNLMIDIQKDTAVEGEE-IEVNCTAMASKPATTIRWFKGNT-ELKGKSEVEEWS
140 150 160 170 180 190
180 190 200 210 220 230
pF1KE2 DGKKCNTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFEDLVTDEETASDALERNS
: .. : .: . : : ..: .. :
NP_055 DMYTVTSQLMLKVHKEDDGVPVICQVEHPAVTGNLQTQRYLEVQYKPQVHIQMTYPLQGL
200 210 220 230 240 250
240 250 260 270 280 290
pF1KE2 LSSQDPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLT
NP_055 TREGDALELTCEAIGKPQPVMVTWVRVDDEMPQHAVLSGPNLFINNLNKTDNGTYRCEAS
260 270 280 290 300 310
>>NP_001287974 (OMIM: 605686) cell adhesion molecule 1 i (443 aa)
initn: 264 init1: 226 opt: 320 Z-score: 290.9 bits: 62.8 E(85289): 1.8e-09
Smith-Waterman score: 320; 30.1% identity (62.8% similar) in 183 aa overlap (23-205:49-229)
10 20 30 40 50
pF1KE2 MWWRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLT
:. .:: ::.. :..: .. .: .: :.
NP_001 AAPPGLRLRLLLLLFSAAALIPTGDGQNLFTKDVTVIEGEVATISCQVNKSDDSVIQLLN
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE2 PSGFTIFLNEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKV
:. ::.. .. ::.:..:::. :...:.... ::...::: : : :.: . . . .
NP_001 PNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQLYTDPPQESYTTI
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE2 IVLATPFKPILEASVIRKQNGEEHVVLMCSTMRSKPPPQITWLLGNSMEVSGGTLHEFET
::. : . ... . .::: . . :..: ::: : :. ::. :..: . : .
NP_001 TVLVPPRNLMIDIQKDTAVEGEE-IEVNCTAMASKPATTIRWFKGNT-ELKGKSEVEEWS
140 150 160 170 180 190
180 190 200 210 220 230
pF1KE2 DGKKCNTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFEDLVTDEETASDALERNS
: .. : .: . : : ..: .. :
NP_001 DMYTVTSQLMLKVHKEDDGVPVICQVEHPAVTGNLQTQRYLEVQYKPQVHIQMTYPLQGL
200 210 220 230 240 250
240 250 260 270 280 290
pF1KE2 LSSQDPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLT
NP_001 TREGDALELTCEAIGKPQPVMVTWVRVDDEMPQHAVLSGPNLFINNLNKTDNGTYRCEAS
260 270 280 290 300 310
>>NP_001287973 (OMIM: 605686) cell adhesion molecule 1 i (453 aa)
initn: 264 init1: 226 opt: 320 Z-score: 290.8 bits: 62.8 E(85289): 1.9e-09
Smith-Waterman score: 320; 30.1% identity (62.8% similar) in 183 aa overlap (23-205:49-229)
10 20 30 40 50
pF1KE2 MWWRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLT
:. .:: ::.. :..: .. .: .: :.
NP_001 AAPPGLRLRLLLLLFSAAALIPTGDGQNLFTKDVTVIEGEVATISCQVNKSDDSVIQLLN
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE2 PSGFTIFLNEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKV
:. ::.. .. ::.:..:::. :...:.... ::...::: : : :.: . . . .
NP_001 PNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQLYTDPPQESYTTI
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE2 IVLATPFKPILEASVIRKQNGEEHVVLMCSTMRSKPPPQITWLLGNSMEVSGGTLHEFET
::. : . ... . .::: . . :..: ::: : :. ::. :..: . : .
NP_001 TVLVPPRNLMIDIQKDTAVEGEE-IEVNCTAMASKPATTIRWFKGNT-ELKGKSEVEEWS
140 150 160 170 180 190
180 190 200 210 220 230
pF1KE2 DGKKCNTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFEDLVTDEETASDALERNS
: .. : .: . : : ..: .. :
NP_001 DMYTVTSQLMLKVHKEDDGVPVICQVEHPAVTGNLQTQRYLEVQYKPQVHIQMTYPLQGL
200 210 220 230 240 250
240 250 260 270 280 290
pF1KE2 LSSQDPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLT
NP_001 TREGDALELTCEAIGKPQPVMVTWVRVDDEMPQHAVLSGPNLFINNLNKTDNGTYRCEAS
260 270 280 290 300 310
>>NP_001120645 (OMIM: 609743) cell adhesion molecule 3 i (398 aa)
initn: 276 init1: 237 opt: 319 Z-score: 290.7 bits: 62.6 E(85289): 1.9e-09
Smith-Waterman score: 319; 31.8% identity (64.6% similar) in 198 aa overlap (27-219:39-232)
10 20 30 40 50
pF1KE2 MWWRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGF
:: : :..::: .. ...::::: .:.
NP_001 LLLLLLFACCWAPGGANLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 TIFLNEYPALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLA
:....: ::.... ::. . ..:::.. ::.: ::: : : .. : : . : ::.
NP_001 TLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 TPFKPILEA--SVIRKQNGEEHVVLMCSTMRSKPPPQITWLLGNSMEVSG-GTLHEFETD
: :::. . : .:.. . ..: :.. ::: ..:: :.. :. : : . . .
NP_001 IPQKPIITGYKSSLREK---DTATLNCQSSGSKPAARLTWRKGDQ-ELHGEPTRIQEDPN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 GKKCNTTSTLIIHTYGKN--STVDCIIRHRGLQGRKLVAPFRFEDLVTDEETASDALERN
:: ...:.. ... .. ... : . :..:.: . :.: : :
NP_001 GKTFTVSSSVTFQVTREDDGASIVCSVNHESLKGADRSTSQRIEVLYTPTAMIRPDPPHP
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE2 SLSSQDPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLL
NP_001 REGQKLLLHCEGRGNPVPQQYLWEKEGSVPPLKMTQESALIFPFLNKSDSGTYGCTATSN
250 260 270 280 290 300
393 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:17:36 2016 done: Sun Nov 6 09:17:37 2016
Total Scan time: 9.220 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]