FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2404, 361 aa
  1>>>pF1KE2404 361 - 361 aa - 361 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1418+/-0.000698; mu= 17.3088+/- 0.042
 mean_var=63.0976+/-12.787, 0's: 0 Z-trim(108.9): 10  B-trim: 0 in 0/49
 Lambda= 0.161461
 statistics sampled from 10516 (10521) to 10516 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.323), width:  16
 Scan time:  2.770

The best scores are:                                      opt bits E(32554)
CCDS1656.1 RSAD2 gene_id:91543|Hs108|chr2          ( 361) 2462 581.9 2.9e-166


>>CCDS1656.1 RSAD2 gene_id:91543|Hs108|chr2               (361 aa)
 initn: 2462 init1: 2462 opt: 2462  Z-score: 3098.3  bits: 581.9 E(32554): 2.9e-166
Smith-Waterman score: 2462; 99.7% identity (99.7% similar) in 361 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KE2 MWVLTPAAFAGKLLSVFRQPLSSLWRSLVPLFCWLRATFWLRATKRRKQQLVLRGPDETK
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS16 MWVLTPAAFAGKLLSVFRQPLSSLWRSLVPLFCWLRATFWLLATKRRKQQLVLRGPDETK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 EEEEDPPLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKEAGMEKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EEEEDPPLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKEAGMEKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 NFSGGEPFLQDRGEYLGKLVRFCKVELRLPSVSIVSNGSLIRERWFQNYGEYLDILAISC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NFSGGEPFLQDRGEYLGKLVRFCKVELRLPSVSIVSNGSLIRERWFQNYGEYLDILAISC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 DSFDEEVNVLIGRGQGKKNHVENLQKLRRWCRDYRVAFKINSVINRFNVEEDMTEQIKAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 DSFDEEVNVLIGRGQGKKNHVENLQKLRRWCRDYRVAFKINSVINRFNVEEDMTEQIKAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 NPVRWKVFQCLLIEGENCGEDALREAERFVIGDEEFERFLERHKEVSCLVPESNQKMKDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NPVRWKVFQCLLIEGENCGEDALREAERFVIGDEEFERFLERHKEVSCLVPESNQKMKDS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 YLILDEYMRFLNCRKGRKDPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYIWSKADLKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 YLILDEYMRFLNCRKGRKDPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYIWSKADLKLD
              310       320       330       340       350       360

        
pF1KE2 W
       :
CCDS16 W
        




361 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:18:08 2016 done: Sun Nov  6 09:18:09 2016
 Total Scan time:  2.770 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]