Result of FASTA (omim) for
pFN21AE2401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2401, 367 aa
1>>>pF1KE2401 367 - 367 aa - 367 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9892+/-0.000398; mu= 6.8307+/- 0.025
mean_var=306.0477+/-64.728, 0's: 0 Z-trim(122.3): 138 B-trim: 1133 in 2/52
Lambda= 0.073313
statistics sampled from 39993 (40184) to 39993 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.471), width: 16
Scan time: 9.870
The best scores are: opt bits E(85289)
XP_016864141 (OMIM: 611645) PREDICTED: CXXC-type z ( 367) 2526 280.4 4.4e-75
NP_079488 (OMIM: 611645) CXXC-type zinc finger pro ( 367) 2526 280.4 4.4e-75
XP_011530586 (OMIM: 611645) PREDICTED: CXXC-type z ( 367) 2526 280.4 4.4e-75
NP_001304139 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
NP_001304134 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
NP_001304130 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
NP_057547 (OMIM: 612752) CXXC-type zinc finger pro ( 322) 462 62.0 2.1e-09
NP_001304128 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
NP_001304140 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
NP_001304132 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
NP_001304135 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
NP_001304133 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
XP_016865062 (OMIM: 612752) PREDICTED: CXXC-type z ( 322) 462 62.0 2.1e-09
NP_001304129 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
NP_001304136 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
NP_001304138 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
NP_001304131 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
NP_001304137 (OMIM: 612752) CXXC-type zinc finger ( 322) 462 62.0 2.1e-09
XP_016866597 (OMIM: 135900,614556,614562) PREDICTE (1551) 294 45.2 0.0012
XP_011538508 (OMIM: 607790) PREDICTED: methylcytos (1501) 291 44.9 0.0015
NP_059989 (OMIM: 135900,614556,614562) AT-rich int (2236) 294 45.4 0.0015
NP_065783 (OMIM: 135900,614556,614562) AT-rich int (2249) 294 45.4 0.0015
XP_016866596 (OMIM: 135900,614556,614562) PREDICTE (2256) 294 45.4 0.0015
XP_016866595 (OMIM: 135900,614556,614562) PREDICTE (2263) 294 45.4 0.0015
XP_005267126 (OMIM: 135900,614556,614562) PREDICTE (2289) 294 45.4 0.0015
XP_016866594 (OMIM: 135900,614556,614562) PREDICTE (2306) 294 45.4 0.0015
XP_016866593 (OMIM: 135900,614556,614562) PREDICTE (2316) 294 45.4 0.0015
XP_016866592 (OMIM: 135900,614556,614562) PREDICTE (2326) 294 45.4 0.0015
XP_011534286 (OMIM: 135900,614556,614562) PREDICTE (2359) 294 45.5 0.0015
XP_011530990 (OMIM: 613555) PREDICTED: methylcytos (1050) 287 44.2 0.0016
NP_085128 (OMIM: 607790) methylcytosine dioxygenas (2136) 291 45.1 0.0018
XP_011538506 (OMIM: 607790) PREDICTED: methylcytos (2165) 291 45.1 0.0018
XP_011530988 (OMIM: 613555) PREDICTED: methylcytos (1776) 288 44.6 0.002
XP_011530987 (OMIM: 613555) PREDICTED: methylcytos (1792) 288 44.7 0.002
NP_001274420 (OMIM: 613555) methylcytosine dioxyge (1795) 287 44.5 0.0022
XP_005264244 (OMIM: 613555) PREDICTED: methylcytos (1795) 287 44.5 0.0022
XP_011530985 (OMIM: 613555) PREDICTED: methylcytos (1811) 287 44.6 0.0022
XP_011530986 (OMIM: 613555) PREDICTED: methylcytos (1811) 287 44.6 0.0022
XP_016859055 (OMIM: 613555) PREDICTED: methylcytos (1811) 287 44.6 0.0022
XP_011530984 (OMIM: 613555) PREDICTED: methylcytos (1811) 287 44.6 0.0022
XP_011533243 (OMIM: 603803) PREDICTED: dachshund h ( 379) 272 42.0 0.0026
NP_004383 (OMIM: 603803) dachshund homolog 1 isofo ( 504) 272 42.2 0.0031
NP_542938 (OMIM: 603803) dachshund homolog 1 isofo ( 558) 272 42.3 0.0033
XP_011533242 (OMIM: 603803) PREDICTED: dachshund h ( 614) 272 42.3 0.0035
NP_542937 (OMIM: 603803) dachshund homolog 1 isofo ( 706) 272 42.4 0.0038
XP_011533241 (OMIM: 603803) PREDICTED: dachshund h ( 758) 272 42.4 0.004
>>XP_016864141 (OMIM: 611645) PREDICTED: CXXC-type zinc (367 aa)
initn: 2526 init1: 2526 opt: 2526 Z-score: 1468.9 bits: 280.4 E(85289): 4.4e-75
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KE2 MNTNVCVEPGPSPEAPGLPKESHLPEGALNSLVDYNSEMERYRSFATSFYKTNGGAFPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNTNVCVEPGPSPEAPGLPKESHLPEGALNSLVDYNSEMERYRSFATSFYKTNGGAFPQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AKIARITTPIFPSSAAAAAAAARIGMSPWNCDNAATAAAATAMLWGSGGGGGGGGGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKIARITTPIFPSSAAAAAAAARIGMSPWNCDNAATAAAATAMLWGSGGGGGGGGGGGGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GGGGGGGGGGGGGGRKSSSAAASSSASSSSAILPAGGGGGGGGGGSRTSMHHRNDSQRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGGGGGGGGGGGGGRKSSSAAASSSASSSSAILPAGGGGGGGGGGSRTSMHHRNDSQRLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 KAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 AKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSA
310 320 330 340 350 360
pF1KE2 EAFRWFF
:::::::
XP_016 EAFRWFF
>>NP_079488 (OMIM: 611645) CXXC-type zinc finger protein (367 aa)
initn: 2526 init1: 2526 opt: 2526 Z-score: 1468.9 bits: 280.4 E(85289): 4.4e-75
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KE2 MNTNVCVEPGPSPEAPGLPKESHLPEGALNSLVDYNSEMERYRSFATSFYKTNGGAFPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MNTNVCVEPGPSPEAPGLPKESHLPEGALNSLVDYNSEMERYRSFATSFYKTNGGAFPQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AKIARITTPIFPSSAAAAAAAARIGMSPWNCDNAATAAAATAMLWGSGGGGGGGGGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 AKIARITTPIFPSSAAAAAAAARIGMSPWNCDNAATAAAATAMLWGSGGGGGGGGGGGGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GGGGGGGGGGGGGGRKSSSAAASSSASSSSAILPAGGGGGGGGGGSRTSMHHRNDSQRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 GGGGGGGGGGGGGGRKSSSAAASSSASSSSAILPAGGGGGGGGGGSRTSMHHRNDSQRLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 KAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 KAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 AKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 AKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSA
310 320 330 340 350 360
pF1KE2 EAFRWFF
:::::::
NP_079 EAFRWFF
>>XP_011530586 (OMIM: 611645) PREDICTED: CXXC-type zinc (367 aa)
initn: 2526 init1: 2526 opt: 2526 Z-score: 1468.9 bits: 280.4 E(85289): 4.4e-75
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KE2 MNTNVCVEPGPSPEAPGLPKESHLPEGALNSLVDYNSEMERYRSFATSFYKTNGGAFPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNTNVCVEPGPSPEAPGLPKESHLPEGALNSLVDYNSEMERYRSFATSFYKTNGGAFPQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AKIARITTPIFPSSAAAAAAAARIGMSPWNCDNAATAAAATAMLWGSGGGGGGGGGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKIARITTPIFPSSAAAAAAAARIGMSPWNCDNAATAAAATAMLWGSGGGGGGGGGGGGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GGGGGGGGGGGGGGRKSSSAAASSSASSSSAILPAGGGGGGGGGGSRTSMHHRNDSQRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGGGGGGGGGGGGRKSSSAAASSSASSSSAILPAGGGGGGGGGGSRTSMHHRNDSQRLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 KAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 AKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSA
310 320 330 340 350 360
pF1KE2 EAFRWFF
:::::::
XP_011 EAFRWFF
>>NP_001304139 (OMIM: 612752) CXXC-type zinc finger prot (322 aa)
initn: 472 init1: 389 opt: 462 Z-score: 289.7 bits: 62.0 E(85289): 2.1e-09
Smith-Waterman score: 522; 38.9% identity (66.5% similar) in 257 aa overlap (118-366:86-321)
90 100 110 120 130 140
pF1KE2 PWNCDNAATAAAATAMLWGSGGGGGGGGGGGGGGGGGGGGGGGGGGGRKSSSAAASSSAS
:..::.:::. :: .. :...:::..:
NP_001 PERRNKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLL
60 70 80 90 100 110
150 160 170 180 190
pF1KE2 SSSAILPAGGGGGGGG------GGSRTSMHHRNDSQRLGKAGCPPEPSLQM--ANTNFLS
... : :. . .. .:. .:. . ..: . . . .::. .:..:.
NP_001 ANGHDLAAAMAVDKSNPTSKHKSGAVASLLSK--AERATELAAEGQLTLQQFAQSTEMLK
120 130 140 150 160 170
200 210 220 230 240 250
pF1KE2 TLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHS
. :: :: :.. : . : . : .. : .: ::.. . ::...::
NP_001 RVVQEHL-PL----MSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMT----
180 190 200 210 220
260 270 280 290 300 310
pF1KE2 PAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCKRLIN
::.. : .::...:.::. :.. .:. ::: ::::::::.:.::.: ::
NP_001 PAGVFLA--ESALHMAGLAEYPMQGELASAISSG--------KKKRKRCGMCAPCRRRIN
230 240 250 260 270
320 330 340 350 360
pF1KE2 CGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSAEAFRWFF
: ::::::::::::::::::::::::::...::.. .:.. :::::
NP_001 CEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWFQ
280 290 300 310 320
>>NP_001304134 (OMIM: 612752) CXXC-type zinc finger prot (322 aa)
initn: 472 init1: 389 opt: 462 Z-score: 289.7 bits: 62.0 E(85289): 2.1e-09
Smith-Waterman score: 522; 38.9% identity (66.5% similar) in 257 aa overlap (118-366:86-321)
90 100 110 120 130 140
pF1KE2 PWNCDNAATAAAATAMLWGSGGGGGGGGGGGGGGGGGGGGGGGGGGGRKSSSAAASSSAS
:..::.:::. :: .. :...:::..:
NP_001 PERRNKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLL
60 70 80 90 100 110
150 160 170 180 190
pF1KE2 SSSAILPAGGGGGGGG------GGSRTSMHHRNDSQRLGKAGCPPEPSLQM--ANTNFLS
... : :. . .. .:. .:. . ..: . . . .::. .:..:.
NP_001 ANGHDLAAAMAVDKSNPTSKHKSGAVASLLSK--AERATELAAEGQLTLQQFAQSTEMLK
120 130 140 150 160 170
200 210 220 230 240 250
pF1KE2 TLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHS
. :: :: :.. : . : . : .. : .: ::.. . ::...::
NP_001 RVVQEHL-PL----MSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMT----
180 190 200 210 220
260 270 280 290 300 310
pF1KE2 PAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCKRLIN
::.. : .::...:.::. :.. .:. ::: ::::::::.:.::.: ::
NP_001 PAGVFLA--ESALHMAGLAEYPMQGELASAISSG--------KKKRKRCGMCAPCRRRIN
230 240 250 260 270
320 330 340 350 360
pF1KE2 CGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSAEAFRWFF
: ::::::::::::::::::::::::::...::.. .:.. :::::
NP_001 CEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWFQ
280 290 300 310 320
>>NP_001304130 (OMIM: 612752) CXXC-type zinc finger prot (322 aa)
initn: 472 init1: 389 opt: 462 Z-score: 289.7 bits: 62.0 E(85289): 2.1e-09
Smith-Waterman score: 522; 38.9% identity (66.5% similar) in 257 aa overlap (118-366:86-321)
90 100 110 120 130 140
pF1KE2 PWNCDNAATAAAATAMLWGSGGGGGGGGGGGGGGGGGGGGGGGGGGGRKSSSAAASSSAS
:..::.:::. :: .. :...:::..:
NP_001 PERRNKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLL
60 70 80 90 100 110
150 160 170 180 190
pF1KE2 SSSAILPAGGGGGGGG------GGSRTSMHHRNDSQRLGKAGCPPEPSLQM--ANTNFLS
... : :. . .. .:. .:. . ..: . . . .::. .:..:.
NP_001 ANGHDLAAAMAVDKSNPTSKHKSGAVASLLSK--AERATELAAEGQLTLQQFAQSTEMLK
120 130 140 150 160 170
200 210 220 230 240 250
pF1KE2 TLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHS
. :: :: :.. : . : . : .. : .: ::.. . ::...::
NP_001 RVVQEHL-PL----MSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMT----
180 190 200 210 220
260 270 280 290 300 310
pF1KE2 PAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCKRLIN
::.. : .::...:.::. :.. .:. ::: ::::::::.:.::.: ::
NP_001 PAGVFLA--ESALHMAGLAEYPMQGELASAISSG--------KKKRKRCGMCAPCRRRIN
230 240 250 260 270
320 330 340 350 360
pF1KE2 CGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSAEAFRWFF
: ::::::::::::::::::::::::::...::.. .:.. :::::
NP_001 CEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWFQ
280 290 300 310 320
>>NP_057547 (OMIM: 612752) CXXC-type zinc finger protein (322 aa)
initn: 472 init1: 389 opt: 462 Z-score: 289.7 bits: 62.0 E(85289): 2.1e-09
Smith-Waterman score: 522; 38.9% identity (66.5% similar) in 257 aa overlap (118-366:86-321)
90 100 110 120 130 140
pF1KE2 PWNCDNAATAAAATAMLWGSGGGGGGGGGGGGGGGGGGGGGGGGGGGRKSSSAAASSSAS
:..::.:::. :: .. :...:::..:
NP_057 PERRNKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLL
60 70 80 90 100 110
150 160 170 180 190
pF1KE2 SSSAILPAGGGGGGGG------GGSRTSMHHRNDSQRLGKAGCPPEPSLQM--ANTNFLS
... : :. . .. .:. .:. . ..: . . . .::. .:..:.
NP_057 ANGHDLAAAMAVDKSNPTSKHKSGAVASLLSK--AERATELAAEGQLTLQQFAQSTEMLK
120 130 140 150 160 170
200 210 220 230 240 250
pF1KE2 TLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHS
. :: :: :.. : . : . : .. : .: ::.. . ::...::
NP_057 RVVQEHL-PL----MSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMT----
180 190 200 210 220
260 270 280 290 300 310
pF1KE2 PAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCKRLIN
::.. : .::...:.::. :.. .:. ::: ::::::::.:.::.: ::
NP_057 PAGVFLA--ESALHMAGLAEYPMQGELASAISSG--------KKKRKRCGMCAPCRRRIN
230 240 250 260 270
320 330 340 350 360
pF1KE2 CGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSAEAFRWFF
: ::::::::::::::::::::::::::...::.. .:.. :::::
NP_057 CEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWFQ
280 290 300 310 320
>>NP_001304128 (OMIM: 612752) CXXC-type zinc finger prot (322 aa)
initn: 472 init1: 389 opt: 462 Z-score: 289.7 bits: 62.0 E(85289): 2.1e-09
Smith-Waterman score: 522; 38.9% identity (66.5% similar) in 257 aa overlap (118-366:86-321)
90 100 110 120 130 140
pF1KE2 PWNCDNAATAAAATAMLWGSGGGGGGGGGGGGGGGGGGGGGGGGGGGRKSSSAAASSSAS
:..::.:::. :: .. :...:::..:
NP_001 PERRNKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLL
60 70 80 90 100 110
150 160 170 180 190
pF1KE2 SSSAILPAGGGGGGGG------GGSRTSMHHRNDSQRLGKAGCPPEPSLQM--ANTNFLS
... : :. . .. .:. .:. . ..: . . . .::. .:..:.
NP_001 ANGHDLAAAMAVDKSNPTSKHKSGAVASLLSK--AERATELAAEGQLTLQQFAQSTEMLK
120 130 140 150 160 170
200 210 220 230 240 250
pF1KE2 TLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHS
. :: :: :.. : . : . : .. : .: ::.. . ::...::
NP_001 RVVQEHL-PL----MSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMT----
180 190 200 210 220
260 270 280 290 300 310
pF1KE2 PAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCKRLIN
::.. : .::...:.::. :.. .:. ::: ::::::::.:.::.: ::
NP_001 PAGVFLA--ESALHMAGLAEYPMQGELASAISSG--------KKKRKRCGMCAPCRRRIN
230 240 250 260 270
320 330 340 350 360
pF1KE2 CGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSAEAFRWFF
: ::::::::::::::::::::::::::...::.. .:.. :::::
NP_001 CEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWFQ
280 290 300 310 320
>>NP_001304140 (OMIM: 612752) CXXC-type zinc finger prot (322 aa)
initn: 472 init1: 389 opt: 462 Z-score: 289.7 bits: 62.0 E(85289): 2.1e-09
Smith-Waterman score: 522; 38.9% identity (66.5% similar) in 257 aa overlap (118-366:86-321)
90 100 110 120 130 140
pF1KE2 PWNCDNAATAAAATAMLWGSGGGGGGGGGGGGGGGGGGGGGGGGGGGRKSSSAAASSSAS
:..::.:::. :: .. :...:::..:
NP_001 PERRNKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLL
60 70 80 90 100 110
150 160 170 180 190
pF1KE2 SSSAILPAGGGGGGGG------GGSRTSMHHRNDSQRLGKAGCPPEPSLQM--ANTNFLS
... : :. . .. .:. .:. . ..: . . . .::. .:..:.
NP_001 ANGHDLAAAMAVDKSNPTSKHKSGAVASLLSK--AERATELAAEGQLTLQQFAQSTEMLK
120 130 140 150 160 170
200 210 220 230 240 250
pF1KE2 TLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHS
. :: :: :.. : . : . : .. : .: ::.. . ::...::
NP_001 RVVQEHL-PL----MSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMT----
180 190 200 210 220
260 270 280 290 300 310
pF1KE2 PAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCKRLIN
::.. : .::...:.::. :.. .:. ::: ::::::::.:.::.: ::
NP_001 PAGVFLA--ESALHMAGLAEYPMQGELASAISSG--------KKKRKRCGMCAPCRRRIN
230 240 250 260 270
320 330 340 350 360
pF1KE2 CGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSAEAFRWFF
: ::::::::::::::::::::::::::...::.. .:.. :::::
NP_001 CEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWFQ
280 290 300 310 320
>>NP_001304132 (OMIM: 612752) CXXC-type zinc finger prot (322 aa)
initn: 472 init1: 389 opt: 462 Z-score: 289.7 bits: 62.0 E(85289): 2.1e-09
Smith-Waterman score: 522; 38.9% identity (66.5% similar) in 257 aa overlap (118-366:86-321)
90 100 110 120 130 140
pF1KE2 PWNCDNAATAAAATAMLWGSGGGGGGGGGGGGGGGGGGGGGGGGGGGRKSSSAAASSSAS
:..::.:::. :: .. :...:::..:
NP_001 PERRNKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLL
60 70 80 90 100 110
150 160 170 180 190
pF1KE2 SSSAILPAGGGGGGGG------GGSRTSMHHRNDSQRLGKAGCPPEPSLQM--ANTNFLS
... : :. . .. .:. .:. . ..: . . . .::. .:..:.
NP_001 ANGHDLAAAMAVDKSNPTSKHKSGAVASLLSK--AERATELAAEGQLTLQQFAQSTEMLK
120 130 140 150 160 170
200 210 220 230 240 250
pF1KE2 TLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHS
. :: :: :.. : . : . : .. : .: ::.. . ::...::
NP_001 RVVQEHL-PL----MSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMT----
180 190 200 210 220
260 270 280 290 300 310
pF1KE2 PAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCKRLIN
::.. : .::...:.::. :.. .:. ::: ::::::::.:.::.: ::
NP_001 PAGVFLA--ESALHMAGLAEYPMQGELASAISSG--------KKKRKRCGMCAPCRRRIN
230 240 250 260 270
320 330 340 350 360
pF1KE2 CGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSAEAFRWFF
: ::::::::::::::::::::::::::...::.. .:.. :::::
NP_001 CEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWFQ
280 290 300 310 320
367 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:12:23 2016 done: Sun Nov 6 09:12:24 2016
Total Scan time: 9.870 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]