Result of FASTA (omim) for
pFN21AE2396
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2396, 258 aa
1>>>pF1KE2396 258 - 258 aa - 258 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5344+/-0.000329; mu= 10.0413+/- 0.021
mean_var=110.2792+/-22.054, 0's: 0 Z-trim(118.2): 18 B-trim: 0 in 0/57
Lambda= 0.122131
statistics sampled from 30835 (30853) to 30835 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.362), width: 16
Scan time: 6.970
The best scores are: opt bits E(85289)
NP_001186184 (OMIM: 609168,616201) shugoshin 1 iso ( 258) 1677 305.6 5.6e-83
NP_001012413 (OMIM: 609168,616201) shugoshin 1 iso ( 258) 1677 305.6 5.6e-83
NP_612493 (OMIM: 609168,616201) shugoshin 1 isofor ( 292) 1641 299.3 5e-81
NP_001186185 (OMIM: 609168,616201) shugoshin 1 iso ( 292) 1641 299.3 5e-81
NP_001012411 (OMIM: 609168,616201) shugoshin 1 iso ( 275) 1043 194.0 2.5e-49
NP_001186182 (OMIM: 609168,616201) shugoshin 1 iso ( 275) 1043 194.0 2.5e-49
NP_001012412 (OMIM: 609168,616201) shugoshin 1 iso ( 309) 1043 194.0 2.7e-49
NP_001186183 (OMIM: 609168,616201) shugoshin 1 iso ( 309) 1043 194.0 2.7e-49
NP_001186186 (OMIM: 609168,616201) shugoshin 1 iso ( 215) 1032 191.9 7.8e-49
NP_001186180 (OMIM: 609168,616201) shugoshin 1 iso ( 527) 1032 192.2 1.6e-48
NP_001012409 (OMIM: 609168,616201) shugoshin 1 iso ( 527) 1032 192.2 1.6e-48
XP_011531678 (OMIM: 609168,616201) PREDICTED: shug ( 561) 1032 192.2 1.7e-48
XP_011531677 (OMIM: 609168,616201) PREDICTED: shug ( 561) 1032 192.2 1.7e-48
NP_001186181 (OMIM: 609168,616201) shugoshin 1 iso ( 561) 1032 192.2 1.7e-48
XP_011531679 (OMIM: 609168,616201) PREDICTED: shug ( 561) 1032 192.2 1.7e-48
NP_001012410 (OMIM: 609168,616201) shugoshin 1 iso ( 561) 1032 192.2 1.7e-48
XP_011531675 (OMIM: 609168,616201) PREDICTED: shug ( 561) 1032 192.2 1.7e-48
>>NP_001186184 (OMIM: 609168,616201) shugoshin 1 isoform (258 aa)
initn: 1677 init1: 1677 opt: 1677 Z-score: 1610.7 bits: 305.6 E(85289): 5.6e-83
Smith-Waterman score: 1677; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)
10 20 30 40 50 60
pF1KE2 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEATPPETQQSPHLSLKDITNVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEATPPETQQSPHLSLKDITNVSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPI
190 200 210 220 230 240
250
pF1KE2 FKQKKDLRRSKKSMKQIQ
::::::::::::::::::
NP_001 FKQKKDLRRSKKSMKQIQ
250
>>NP_001012413 (OMIM: 609168,616201) shugoshin 1 isoform (258 aa)
initn: 1677 init1: 1677 opt: 1677 Z-score: 1610.7 bits: 305.6 E(85289): 5.6e-83
Smith-Waterman score: 1677; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)
10 20 30 40 50 60
pF1KE2 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEATPPETQQSPHLSLKDITNVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEATPPETQQSPHLSLKDITNVSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPI
190 200 210 220 230 240
250
pF1KE2 FKQKKDLRRSKKSMKQIQ
::::::::::::::::::
NP_001 FKQKKDLRRSKKSMKQIQ
250
>>NP_612493 (OMIM: 609168,616201) shugoshin 1 isoform 1K (292 aa)
initn: 1640 init1: 1640 opt: 1641 Z-score: 1575.7 bits: 299.3 E(85289): 5e-81
Smith-Waterman score: 1641; 98.1% identity (98.8% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KE2 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEATPPETQQSPHLSLKDITNVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEATPPETQQSPHLSLKDITNVSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 YPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPI
190 200 210 220 230 240
250
pF1KE2 FKQKKDLRRSKKSMKQIQ
:::::::::::: ..
NP_612 FKQKKDLRRSKKRALEVSPAKEAIFILYYVREFVSRFPDCRKCKLETHICLR
250 260 270 280 290
>>NP_001186185 (OMIM: 609168,616201) shugoshin 1 isoform (292 aa)
initn: 1640 init1: 1640 opt: 1641 Z-score: 1575.7 bits: 299.3 E(85289): 5e-81
Smith-Waterman score: 1641; 98.1% identity (98.8% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KE2 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEATPPETQQSPHLSLKDITNVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEATPPETQQSPHLSLKDITNVSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPI
190 200 210 220 230 240
250
pF1KE2 FKQKKDLRRSKKSMKQIQ
:::::::::::: ..
NP_001 FKQKKDLRRSKKRALEVSPAKEAIFILYYVREFVSRFPDCRKCKLETHICLR
250 260 270 280 290
>>NP_001012411 (OMIM: 609168,616201) shugoshin 1 isoform (275 aa)
initn: 1663 init1: 1024 opt: 1043 Z-score: 1006.6 bits: 194.0 E(85289): 2.5e-49
Smith-Waterman score: 1633; 93.8% identity (93.8% similar) in 275 aa overlap (1-258:1-275)
10 20 30 40 50 60
pF1KE2 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160
pF1KE2 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIE-----------------ATPPE
:::::::::::::::::::::::::::::::::::::: :::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSATPPE
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE2 TQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASK
190 200 210 220 230 240
230 240 250
pF1KE2 LRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ
:::::::::::::::::::::::::::::::::::
NP_001 LRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ
250 260 270
>>NP_001186182 (OMIM: 609168,616201) shugoshin 1 isoform (275 aa)
initn: 1663 init1: 1024 opt: 1043 Z-score: 1006.6 bits: 194.0 E(85289): 2.5e-49
Smith-Waterman score: 1633; 93.8% identity (93.8% similar) in 275 aa overlap (1-258:1-275)
10 20 30 40 50 60
pF1KE2 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160
pF1KE2 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIE-----------------ATPPE
:::::::::::::::::::::::::::::::::::::: :::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSATPPE
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE2 TQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASK
190 200 210 220 230 240
230 240 250
pF1KE2 LRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ
:::::::::::::::::::::::::::::::::::
NP_001 LRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ
250 260 270
>>NP_001012412 (OMIM: 609168,616201) shugoshin 1 isoform (309 aa)
initn: 1626 init1: 1024 opt: 1043 Z-score: 1005.9 bits: 194.0 E(85289): 2.7e-49
Smith-Waterman score: 1597; 92.0% identity (92.7% similar) in 274 aa overlap (1-257:1-274)
10 20 30 40 50 60
pF1KE2 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160
pF1KE2 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIE-----------------ATPPE
:::::::::::::::::::::::::::::::::::::: :::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSATPPE
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE2 TQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASK
190 200 210 220 230 240
230 240 250
pF1KE2 LRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ
::::::::::::::::::::::::::::: ..
NP_001 LRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVREFVSRFPDCRKC
250 260 270 280 290 300
NP_001 KLETHICLR
>>NP_001186183 (OMIM: 609168,616201) shugoshin 1 isoform (309 aa)
initn: 1626 init1: 1024 opt: 1043 Z-score: 1005.9 bits: 194.0 E(85289): 2.7e-49
Smith-Waterman score: 1597; 92.0% identity (92.7% similar) in 274 aa overlap (1-257:1-274)
10 20 30 40 50 60
pF1KE2 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160
pF1KE2 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIE-----------------ATPPE
:::::::::::::::::::::::::::::::::::::: :::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSATPPE
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE2 TQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASK
190 200 210 220 230 240
230 240 250
pF1KE2 LRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ
::::::::::::::::::::::::::::: ..
NP_001 LRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVREFVSRFPDCRKC
250 260 270 280 290 300
NP_001 KLETHICLR
>>NP_001186186 (OMIM: 609168,616201) shugoshin 1 isoform (215 aa)
initn: 1024 init1: 1024 opt: 1032 Z-score: 997.7 bits: 191.9 E(85289): 7.8e-49
Smith-Waterman score: 1032; 96.4% identity (96.4% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KE2 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEATPPETQQSPHLSLKDITNVSL
:::::::::::::::::::::::::::::::::::::: : :
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGALEV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPI
NP_001 SPAKEAIFILYYVREFVSRFPDCRKCKLETHICLR
190 200 210
>>NP_001186180 (OMIM: 609168,616201) shugoshin 1 isoform (527 aa)
initn: 1658 init1: 1024 opt: 1032 Z-score: 992.1 bits: 192.2 E(85289): 1.6e-48
Smith-Waterman score: 1032; 96.4% identity (96.4% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KE2 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEATPPETQQSPHLSLKDITNVSL
:::::::::::::::::::::::::::::::::::::: : :
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPI
NP_001 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
190 200 210 220 230 240
>--
initn: 683 init1: 648 opt: 665 Z-score: 642.6 bits: 127.5 E(85289): 4.7e-29
Smith-Waterman score: 665; 75.7% identity (84.7% similar) in 144 aa overlap (118-258:386-527)
90 100 110 120 130 140
pF1KE2 ECYYLTCQLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDS---SRNLFVKDLPQIPLE
:. ..:.:... .: : . : .
NP_001 SNREENNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEK
360 370 380 390 400 410
150 160 170 180 190 200
pF1KE2 ETELPGQGESFQIEATPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVAL
::: :. . .:::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETE--GSKPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVAL
420 430 440 450 460 470
210 220 230 240 250
pF1KE2 PKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ
480 490 500 510 520
258 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:21:29 2016 done: Sun Nov 6 09:21:30 2016
Total Scan time: 6.970 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]