FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2385, 626 aa
  1>>>pF1KE2385 626 - 626 aa - 626 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2429+/-0.000905; mu= 10.9603+/- 0.055
 mean_var=122.8491+/-24.905, 0's: 0 Z-trim(109.1): 18  B-trim: 85 in 1/53
 Lambda= 0.115715
 statistics sampled from 10644 (10650) to 10644 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.327), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS10106.1 WDR76 gene_id:79968|Hs108|chr15        ( 626) 4139 702.4 4.7e-202
CCDS53938.1 WDR76 gene_id:79968|Hs108|chr15        ( 562) 3740 635.7 4.8e-182


>>CCDS10106.1 WDR76 gene_id:79968|Hs108|chr15             (626 aa)
 initn: 4139 init1: 4139 opt: 4139  Z-score: 3741.0  bits: 702.4 E(32554): 4.7e-202
Smith-Waterman score: 4139; 99.8% identity (100.0% similar) in 626 aa overlap (1-626:1-626)

               10        20        30        40        50        60
pF1KE2 MSRSGAAAEKADSRQRPQMKVNEYKENQNIAYVSLRPAQTTVLIKTAKVYLAPFSLSNYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSRSGAAAEKADSRQRPQMKVNEYKENQNIAYVSLRPAQTTVLIKTAKVYLAPFSLSNYQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LDQLMCPKSLSEKNSNNEVACKKTKIKKTCRRIIPPKMKNTSSKAESTLQNSSSAVHTES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LDQLMCPKSLSEKNSNNEVACKKTKIKKTCRRIIPPKMKNTSSKAESTLQNSSSAVHTES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 NKLQPKRTADAMNLSVDVESSQDGDSDEDTTPALDFSGLSPYERKRLKNISENADFFASL
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS10 NKLQPKRTADAMNLSVDVESSQDGDSDEDTTPSLDFSGLSPYERKRLKNISENADFFASL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 QLSESAARLREMIEKRQPPKSKRKKPKRENGIGCRRSMRLLKVDPSGVSLPAAPTPPTLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QLSESAARLREMIEKRQPPKSKRKKPKRENGIGCRRSMRLLKVDPSGVSLPAAPTPPTLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ADETPLLPPGPLEMTSENQEDNNERFKGFLHTWAGMSKPSSKNTEKGLSSIKSYKANLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ADETPLLPPGPLEMTSENQEDNNERFKGFLHTWAGMSKPSSKNTEKGLSSIKSYKANLNG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 MVISEDTVYKVTTGPIFSMALHPSETRTLVAVGAKFGQVGLCDLTQQPKEDGVYVFHPHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MVISEDTVYKVTTGPIFSMALHPSETRTLVAVGAKFGQVGLCDLTQQPKEDGVYVFHPHS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 QPVSCLYFSPANPAHILSLSYDGTLRCGDFSRAIFEEVYRNERSSFSSFDFLAEDASTLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QPVSCLYFSPANPAHILSLSYDGTLRCGDFSRAIFEEVYRNERSSFSSFDFLAEDASTLI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 VGHWDGNMSLVDRRTPGTSYEKLTSSSMGKIRTVHVHPVHRQYFITAGLRDTHIYDARRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VGHWDGNMSLVDRRTPGTSYEKLTSSSMGKIRTVHVHPVHRQYFITAGLRDTHIYDARRL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 NSRRSQPLISLTEHTKSIASAYFSPLTGNRVVTTCADCNLRIFDSSCISSKIPLLTTIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NSRRSQPLISLTEHTKSIASAYFSPLTGNRVVTTCADCNLRIFDSSCISSKIPLLTTIRH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 NTFTGRWLTRFQAMWDPKQEDCVIVGSMAHPRRVEIFHETGKRVHSFGGEYLVSVCSINA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NTFTGRWLTRFQAMWDPKQEDCVIVGSMAHPRRVEIFHETGKRVHSFGGEYLVSVCSINA
              550       560       570       580       590       600

              610       620      
pF1KE2 MHPTRYILAGGNSSGKIHVFMNEKSC
       ::::::::::::::::::::::::::
CCDS10 MHPTRYILAGGNSSGKIHVFMNEKSC
              610       620      

>>CCDS53938.1 WDR76 gene_id:79968|Hs108|chr15             (562 aa)
 initn: 3740 init1: 3740 opt: 3740  Z-score: 3381.8  bits: 635.7 E(32554): 4.8e-182
Smith-Waterman score: 3740; 99.8% identity (100.0% similar) in 562 aa overlap (65-626:1-562)

           40        50        60        70        80        90    
pF1KE2 LRPAQTTVLIKTAKVYLAPFSLSNYQLDQLMCPKSLSEKNSNNEVACKKTKIKKTCRRII
                                     ::::::::::::::::::::::::::::::
CCDS53                               MCPKSLSEKNSNNEVACKKTKIKKTCRRII
                                             10        20        30

          100       110       120       130       140       150    
pF1KE2 PPKMKNTSSKAESTLQNSSSAVHTESNKLQPKRTADAMNLSVDVESSQDGDSDEDTTPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS53 PPKMKNTSSKAESTLQNSSSAVHTESNKLQPKRTADAMNLSVDVESSQDGDSDEDTTPSL
               40        50        60        70        80        90

          160       170       180       190       200       210    
pF1KE2 DFSGLSPYERKRLKNISENADFFASLQLSESAARLREMIEKRQPPKSKRKKPKRENGIGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DFSGLSPYERKRLKNISENADFFASLQLSESAARLREMIEKRQPPKSKRKKPKRENGIGC
              100       110       120       130       140       150

          220       230       240       250       260       270    
pF1KE2 RRSMRLLKVDPSGVSLPAAPTPPTLVADETPLLPPGPLEMTSENQEDNNERFKGFLHTWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RRSMRLLKVDPSGVSLPAAPTPPTLVADETPLLPPGPLEMTSENQEDNNERFKGFLHTWA
              160       170       180       190       200       210

          280       290       300       310       320       330    
pF1KE2 GMSKPSSKNTEKGLSSIKSYKANLNGMVISEDTVYKVTTGPIFSMALHPSETRTLVAVGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GMSKPSSKNTEKGLSSIKSYKANLNGMVISEDTVYKVTTGPIFSMALHPSETRTLVAVGA
              220       230       240       250       260       270

          340       350       360       370       380       390    
pF1KE2 KFGQVGLCDLTQQPKEDGVYVFHPHSQPVSCLYFSPANPAHILSLSYDGTLRCGDFSRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KFGQVGLCDLTQQPKEDGVYVFHPHSQPVSCLYFSPANPAHILSLSYDGTLRCGDFSRAI
              280       290       300       310       320       330

          400       410       420       430       440       450    
pF1KE2 FEEVYRNERSSFSSFDFLAEDASTLIVGHWDGNMSLVDRRTPGTSYEKLTSSSMGKIRTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FEEVYRNERSSFSSFDFLAEDASTLIVGHWDGNMSLVDRRTPGTSYEKLTSSSMGKIRTV
              340       350       360       370       380       390

          460       470       480       490       500       510    
pF1KE2 HVHPVHRQYFITAGLRDTHIYDARRLNSRRSQPLISLTEHTKSIASAYFSPLTGNRVVTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HVHPVHRQYFITAGLRDTHIYDARRLNSRRSQPLISLTEHTKSIASAYFSPLTGNRVVTT
              400       410       420       430       440       450

          520       530       540       550       560       570    
pF1KE2 CADCNLRIFDSSCISSKIPLLTTIRHNTFTGRWLTRFQAMWDPKQEDCVIVGSMAHPRRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CADCNLRIFDSSCISSKIPLLTTIRHNTFTGRWLTRFQAMWDPKQEDCVIVGSMAHPRRV
              460       470       480       490       500       510

          580       590       600       610       620      
pF1KE2 EIFHETGKRVHSFGGEYLVSVCSINAMHPTRYILAGGNSSGKIHVFMNEKSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EIFHETGKRVHSFGGEYLVSVCSINAMHPTRYILAGGNSSGKIHVFMNEKSC
              520       530       540       550       560  




626 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:14:29 2016 done: Sun Nov  6 14:14:29 2016
 Total Scan time:  3.390 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]