FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2376, 517 aa
  1>>>pF1KE2376 517 - 517 aa - 517 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2420+/-0.000931; mu= -5.5040+/- 0.056
 mean_var=459.5970+/-101.419, 0's: 0 Z-trim(116.9): 27  B-trim: 0 in 0/54
 Lambda= 0.059825
 statistics sampled from 17568 (17586) to 17568 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.54), width:  16
 Scan time:  4.370

The best scores are:                                      opt bits E(32554)
CCDS44841.1 AEBP2 gene_id:121536|Hs108|chr12       ( 517) 3453 312.2 9.1e-85
CCDS44842.1 AEBP2 gene_id:121536|Hs108|chr12       ( 503) 3369 304.9 1.4e-82
CCDS58215.1 AEBP2 gene_id:121536|Hs108|chr12       ( 301) 2006 187.0 2.5e-47


>>CCDS44841.1 AEBP2 gene_id:121536|Hs108|chr12            (517 aa)
 initn: 3453 init1: 3453 opt: 3453  Z-score: 1635.3  bits: 312.2 E(32554): 9.1e-85
Smith-Waterman score: 3453; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KE2 MAAAITDMADLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAAITDMADLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 GGSGGGGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GGSGGGGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 VSSGGDEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDSISSTIMDVDSTISSGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VSSGGDEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDSISSTIMDVDSTISSGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 STPAMMNGQGSTTSSSKNIAYNCCWDQCQACFNSSPDLADHIRSIHVDGQRGGVFVCLWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 STPAMMNGQGSTTSSSKNIAYNCCWDQCQACFNSSPDLADHIRSIHVDGQRGGVFVCLWK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 GCKVYNTPSTSQSWLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTHFSQQNSSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GCKVYNTPSTSQSWLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTHFSQQNSSK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 VSSQPKAKEESPSKAGMNKRRKLKNKRRRSLPRPHDFFDAQTLDAIRHRAICFNLSAHIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VSSQPKAKEESPSKAGMNKRRKLKNKRRRSLPRPHDFFDAQTLDAIRHRAICFNLSAHIE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 SLGKGHSVVFHSTVIAKRKEDSGKIKLLLHWMPEDILPDVWVNESERHQLKTKVVHLSKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLGKGHSVVFHSTVIAKRKEDSGKIKLLLHWMPEDILPDVWVNESERHQLKTKVVHLSKL
              430       440       450       460       470       480

              490       500       510       
pF1KE2 PKDTALLLDPNIYRTMPQKRLKRTLIRKVFNLYLSKQ
       :::::::::::::::::::::::::::::::::::::
CCDS44 PKDTALLLDPNIYRTMPQKRLKRTLIRKVFNLYLSKQ
              490       500       510       

>>CCDS44842.1 AEBP2 gene_id:121536|Hs108|chr12            (503 aa)
 initn: 3369 init1: 3369 opt: 3369  Z-score: 1596.2  bits: 304.9 E(32554): 1.4e-82
Smith-Waterman score: 3369; 100.0% identity (100.0% similar) in 503 aa overlap (1-503:1-503)

               10        20        30        40        50        60
pF1KE2 MAAAITDMADLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAAITDMADLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 GGSGGGGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GGSGGGGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 VSSGGDEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDSISSTIMDVDSTISSGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VSSGGDEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDSISSTIMDVDSTISSGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 STPAMMNGQGSTTSSSKNIAYNCCWDQCQACFNSSPDLADHIRSIHVDGQRGGVFVCLWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 STPAMMNGQGSTTSSSKNIAYNCCWDQCQACFNSSPDLADHIRSIHVDGQRGGVFVCLWK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 GCKVYNTPSTSQSWLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTHFSQQNSSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GCKVYNTPSTSQSWLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTHFSQQNSSK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 VSSQPKAKEESPSKAGMNKRRKLKNKRRRSLPRPHDFFDAQTLDAIRHRAICFNLSAHIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VSSQPKAKEESPSKAGMNKRRKLKNKRRRSLPRPHDFFDAQTLDAIRHRAICFNLSAHIE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 SLGKGHSVVFHSTVIAKRKEDSGKIKLLLHWMPEDILPDVWVNESERHQLKTKVVHLSKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLGKGHSVVFHSTVIAKRKEDSGKIKLLLHWMPEDILPDVWVNESERHQLKTKVVHLSKL
              430       440       450       460       470       480

              490       500       510       
pF1KE2 PKDTALLLDPNIYRTMPQKRLKRTLIRKVFNLYLSKQ
       :::::::::::::::::::::::              
CCDS44 PKDTALLLDPNIYRTMPQKRLKR              
              490       500                 

>>CCDS58215.1 AEBP2 gene_id:121536|Hs108|chr12            (301 aa)
 initn: 2006 init1: 2006 opt: 2006  Z-score: 963.2  bits: 187.0 E(32554): 2.5e-47
Smith-Waterman score: 2006; 100.0% identity (100.0% similar) in 294 aa overlap (224-517:8-301)

           200       210       220       230       240       250   
pF1KE2 GGSSATSGGRRGSLEMSSDGEPLSRMDSEDSISSTIMDVDSTISSGRSTPAMMNGQGSTT
                                     ::::::::::::::::::::::::::::::
CCDS58                        MYTRRYSSISSTIMDVDSTISSGRSTPAMMNGQGSTT
                                      10        20        30       

           260       270       280       290       300       310   
pF1KE2 SSSKNIAYNCCWDQCQACFNSSPDLADHIRSIHVDGQRGGVFVCLWKGCKVYNTPSTSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SSSKNIAYNCCWDQCQACFNSSPDLADHIRSIHVDGQRGGVFVCLWKGCKVYNTPSTSQS
        40        50        60        70        80        90       

           320       330       340       350       360       370   
pF1KE2 WLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTHFSQQNSSKVSSQPKAKEESPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 WLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTHFSQQNSSKVSSQPKAKEESPS
       100       110       120       130       140       150       

           380       390       400       410       420       430   
pF1KE2 KAGMNKRRKLKNKRRRSLPRPHDFFDAQTLDAIRHRAICFNLSAHIESLGKGHSVVFHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KAGMNKRRKLKNKRRRSLPRPHDFFDAQTLDAIRHRAICFNLSAHIESLGKGHSVVFHST
       160       170       180       190       200       210       

           440       450       460       470       480       490   
pF1KE2 VIAKRKEDSGKIKLLLHWMPEDILPDVWVNESERHQLKTKVVHLSKLPKDTALLLDPNIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VIAKRKEDSGKIKLLLHWMPEDILPDVWVNESERHQLKTKVVHLSKLPKDTALLLDPNIY
       220       230       240       250       260       270       

           500       510       
pF1KE2 RTMPQKRLKRTLIRKVFNLYLSKQ
       ::::::::::::::::::::::::
CCDS58 RTMPQKRLKRTLIRKVFNLYLSKQ
       280       290       300 




517 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:45:37 2016 done: Sun Nov  6 10:45:38 2016
 Total Scan time:  4.370 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]