FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2361, 264 aa
  1>>>pF1KE2361 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1775+/-0.00072; mu= 2.8684+/- 0.044
 mean_var=152.2230+/-30.935, 0's: 0 Z-trim(115.1): 5  B-trim: 10 in 1/53
 Lambda= 0.103952
 statistics sampled from 15606 (15609) to 15606 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.479), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS10070.2 CHAC1 gene_id:79094|Hs108|chr15        ( 264) 1859 289.5 1.6e-78
CCDS45233.1 CHAC1 gene_id:79094|Hs108|chr15        ( 219) 1057 169.2 2.2e-42
CCDS33196.1 CHAC2 gene_id:494143|Hs108|chr2        ( 184)  594 99.7 1.5e-21


>>CCDS10070.2 CHAC1 gene_id:79094|Hs108|chr15             (264 aa)
 initn: 1859 init1: 1859 opt: 1859  Z-score: 1523.2  bits: 289.5 E(32554): 1.6e-78
Smith-Waterman score: 1859; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KE2 MGGAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGGAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GRVVTLLEDHEGCTWGVAYQVQGEQVSKALKYLNVREAVLGGYDTKEVTFYPQDAPDQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GRVVTLLEDHEGCTWGVAYQVQGEQVSKALKYLNVREAVLGGYDTKEVTFYPQDAPDQPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 KALAYVATPQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KALAYVATPQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHL
              190       200       210       220       230       240

              250       260    
pF1KE2 AAIVDAVGTMLPCFCPTEQALALV
       ::::::::::::::::::::::::
CCDS10 AAIVDAVGTMLPCFCPTEQALALV
              250       260    

>>CCDS45233.1 CHAC1 gene_id:79094|Hs108|chr15             (219 aa)
 initn: 1057 init1: 1057 opt: 1057  Z-score: 874.4  bits: 169.2 E(32554): 2.2e-42
Smith-Waterman score: 1468; 83.0% identity (83.0% similar) in 264 aa overlap (1-264:1-219)

               10        20        30        40        50        60
pF1KE2 MGGAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGGAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GRVVTLLEDHEGCTWGVAYQVQGEQVSKALKYLNVREAVLGGYDTKEVTFYPQDAPDQPL
       :::::::::::::::::::::::::                                   
CCDS45 GRVVTLLEDHEGCTWGVAYQVQGEQ-----------------------------------
              130       140                                        

              190       200       210       220       230       240
pF1KE2 KALAYVATPQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHL
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ----------NPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHL
                   150       160       170       180       190     

              250       260    
pF1KE2 AAIVDAVGTMLPCFCPTEQALALV
       ::::::::::::::::::::::::
CCDS45 AAIVDAVGTMLPCFCPTEQALALV
         200       210         

>>CCDS33196.1 CHAC2 gene_id:494143|Hs108|chr2             (184 aa)
 initn: 595 init1: 349 opt: 594  Z-score: 500.3  bits: 99.7 E(32554): 1.5e-21
Smith-Waterman score: 594; 51.5% identity (72.2% similar) in 169 aa overlap (75-243:1-167)

           50        60        70        80        90       100    
pF1KE2 QESAAPNTPPTSQSPTPSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSR
                                     .:.::::::.:. :: :.:. ::.. .:::
CCDS33                               MWVFGYGSLIWKVDFPYQDKLVGYITNYSR
                                             10        20        30

          110       120       130       140       150       160    
pF1KE2 RFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVQGEQVSKALKYLNVREAVLGGYD
       :::::.: :::    :::::::.::  ::.:::::..   .  ..  ::. ::   ::: 
CCDS33 RFWQGSTDHRGVPGKPGRVVTLVEDPAGCVWGVAYRLPVGKEEEVKAYLDFREK--GGYR
               40        50        60        70        80          

          170       180       190       200       210       220    
pF1KE2 TKEVTFYPQDAPDQPLKALAYVATPQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRL
       :  : :::.:   .:...: :..: .:: :::::: : :: ::.   : ::.: :::..:
CCDS33 TTTVIFYPKDPTTKPFSVLLYIGTCDNPDYLGPAPLEDIAEQIFNAAGPSGRNTEYLFEL
       90       100       110       120       130       140        

          230       240       250       260    
pF1KE2 ADFMQLCGPQAQDEHLAAIVDAVGTMLPCFCPTEQALALV
       :. ..   :.  :::: :.                     
CCDS33 ANSIRNLVPEEADEHLFALEKLVKERLEGKQNLNCI    
      150       160       170       180        




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:19:09 2016 done: Sun Nov  6 14:19:09 2016
 Total Scan time:  2.040 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]