FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2313, 625 aa
  1>>>pF1KE2313 625 - 625 aa - 625 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5345+/- 0.001; mu= 12.7167+/- 0.060
 mean_var=75.0130+/-14.940, 0's: 0 Z-trim(105.2): 30  B-trim: 107 in 1/50
 Lambda= 0.148083
 statistics sampled from 8265 (8276) to 8265 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.254), width:  16
 Scan time:  3.480

The best scores are:                                      opt bits E(32554)
CCDS6669.1 RMI1 gene_id:80010|Hs108|chr9           ( 625) 4079 881.1       0


>>CCDS6669.1 RMI1 gene_id:80010|Hs108|chr9                (625 aa)
 initn: 4079 init1: 4079 opt: 4079  Z-score: 4707.0  bits: 881.1 E(32554):    0
Smith-Waterman score: 4079; 99.8% identity (100.0% similar) in 625 aa overlap (1-625:1-625)

               10        20        30        40        50        60
pF1KE2 MNVTSIALRAETWLLAAWHVKVPPMWLEACINWIQEENNNVNLSQAQMNKQVFEQWLLTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MNVTSIALRAETWLLAAWHVKVPPMWLEACINWIQEENNNVNLSQAQMNKQVFEQWLLTD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVTAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVTAEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 QVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 QVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LLKPENVKVLGGEVDALLEEYAQEKVLARLIGEPDLVVSVIPNNSNENIPRVTDVLDPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LLKPENVKVLGGEVDALLEEYAQEKVLARLIGEPDLVVSVIPNNSNENIPRVTDVLDPAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 GPSDEELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEFVISPRPKEEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GPSDEELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEFVISPRPKEEPS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 NLSIHVMDGELDDFSLEEALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NLSIHVMDGELDDFSLEEALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 NFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNRSIFSVHCNVPLAHDFTNKEKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNRSIFSVHCNVPLAHDFTNKEKN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 LETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRSSQISNENDCNLQSCSLRSSENSINL
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS66 LETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISNENDCNLQSCSLRSSENSINL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 SIAMDLYSPPFVYLSVLMASKPKEVTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SIAMDLYSPPFVYLSVLMASKPKEVTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTAY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 LDVDFVDEILTSLIGFSVPEMKQSKKDPLQYQKFLEGLQKCQRDLIDLCCLMTISFNPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LDVDFVDEILTSLIGFSVPEMKQSKKDPLQYQKFLEGLQKCQRDLIDLCCLMTISFNPSL
              550       560       570       580       590       600

              610       620     
pF1KE2 SKAMVLALQDVNMEHLENLKKRLNK
       :::::::::::::::::::::::::
CCDS66 SKAMVLALQDVNMEHLENLKKRLNK
              610       620     




625 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:45:40 2016 done: Sun Nov  6 15:45:41 2016
 Total Scan time:  3.480 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]