Result of FASTA (omim) for
pFN21AE2306
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2306, 297 aa
1>>>pF1KE2306 297 - 297 aa - 297 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3223+/-0.000322; mu= 6.8495+/- 0.020
mean_var=130.7856+/-26.828, 0's: 0 Z-trim(119.6): 27 B-trim: 251 in 1/55
Lambda= 0.112149
statistics sampled from 33784 (33811) to 33784 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.396), width: 16
Scan time: 8.180
The best scores are: opt bits E(85289)
XP_016881950 (OMIM: 126380,610758) PREDICTED: DNA ( 297) 1987 332.2 7.3e-91
NP_001974 (OMIM: 126380,610758) DNA excision repai ( 297) 1987 332.2 7.3e-91
XP_016881953 (OMIM: 126380,610758) PREDICTED: DNA ( 297) 1987 332.2 7.3e-91
XP_016881952 (OMIM: 126380,610758) PREDICTED: DNA ( 297) 1987 332.2 7.3e-91
XP_016881951 (OMIM: 126380,610758) PREDICTED: DNA ( 297) 1987 332.2 7.3e-91
XP_016881949 (OMIM: 126380,610758) PREDICTED: DNA ( 297) 1987 332.2 7.3e-91
XP_016881948 (OMIM: 126380,610758) PREDICTED: DNA ( 323) 1887 316.1 5.8e-86
XP_011524912 (OMIM: 126380,610758) PREDICTED: DNA ( 323) 1887 316.1 5.8e-86
XP_005258691 (OMIM: 126380,610758) PREDICTED: DNA ( 323) 1887 316.1 5.8e-86
NP_973730 (OMIM: 126380,610758) DNA excision repai ( 323) 1887 316.1 5.8e-86
XP_005258693 (OMIM: 126380,610758) PREDICTED: DNA ( 323) 1887 316.1 5.8e-86
XP_005258692 (OMIM: 126380,610758) PREDICTED: DNA ( 323) 1887 316.1 5.8e-86
XP_016881954 (OMIM: 126380,610758) PREDICTED: DNA ( 273) 1587 267.5 2.1e-71
XP_016881955 (OMIM: 126380,610758) PREDICTED: DNA ( 273) 1587 267.5 2.1e-71
NP_001159521 (OMIM: 126380,610758) DNA excision re ( 273) 1587 267.5 2.1e-71
XP_005258694 (OMIM: 126380,610758) PREDICTED: DNA ( 299) 1587 267.5 2.2e-71
>>XP_016881950 (OMIM: 126380,610758) PREDICTED: DNA exci (297 aa)
initn: 1987 init1: 1987 opt: 1987 Z-score: 1752.2 bits: 332.2 E(85289): 7.3e-91
Smith-Waterman score: 1987; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
250 260 270 280 290
>>NP_001974 (OMIM: 126380,610758) DNA excision repair pr (297 aa)
initn: 1987 init1: 1987 opt: 1987 Z-score: 1752.2 bits: 332.2 E(85289): 7.3e-91
Smith-Waterman score: 1987; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
250 260 270 280 290
>>XP_016881953 (OMIM: 126380,610758) PREDICTED: DNA exci (297 aa)
initn: 1987 init1: 1987 opt: 1987 Z-score: 1752.2 bits: 332.2 E(85289): 7.3e-91
Smith-Waterman score: 1987; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
250 260 270 280 290
>>XP_016881952 (OMIM: 126380,610758) PREDICTED: DNA exci (297 aa)
initn: 1987 init1: 1987 opt: 1987 Z-score: 1752.2 bits: 332.2 E(85289): 7.3e-91
Smith-Waterman score: 1987; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
250 260 270 280 290
>>XP_016881951 (OMIM: 126380,610758) PREDICTED: DNA exci (297 aa)
initn: 1987 init1: 1987 opt: 1987 Z-score: 1752.2 bits: 332.2 E(85289): 7.3e-91
Smith-Waterman score: 1987; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
250 260 270 280 290
>>XP_016881949 (OMIM: 126380,610758) PREDICTED: DNA exci (297 aa)
initn: 1987 init1: 1987 opt: 1987 Z-score: 1752.2 bits: 332.2 E(85289): 7.3e-91
Smith-Waterman score: 1987; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
250 260 270 280 290
>>XP_016881948 (OMIM: 126380,610758) PREDICTED: DNA exci (323 aa)
initn: 1912 init1: 1887 opt: 1887 Z-score: 1664.3 bits: 316.1 E(85289): 5.8e-86
Smith-Waterman score: 1887; 99.3% identity (99.6% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::.: :
XP_016 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKVRALGKNPRSWGKERAPNK
250 260 270 280 290 300
XP_016 HNLRPQSFKVKKEPKTRHSGFRL
310 320
>>XP_011524912 (OMIM: 126380,610758) PREDICTED: DNA exci (323 aa)
initn: 1912 init1: 1887 opt: 1887 Z-score: 1664.3 bits: 316.1 E(85289): 5.8e-86
Smith-Waterman score: 1887; 99.3% identity (99.6% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::.: :
XP_011 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKVRALGKNPRSWGKERAPNK
250 260 270 280 290 300
XP_011 HNLRPQSFKVKKEPKTRHSGFRL
310 320
>>XP_005258691 (OMIM: 126380,610758) PREDICTED: DNA exci (323 aa)
initn: 1912 init1: 1887 opt: 1887 Z-score: 1664.3 bits: 316.1 E(85289): 5.8e-86
Smith-Waterman score: 1887; 99.3% identity (99.6% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::.: :
XP_005 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKVRALGKNPRSWGKERAPNK
250 260 270 280 290 300
XP_005 HNLRPQSFKVKKEPKTRHSGFRL
310 320
>>NP_973730 (OMIM: 126380,610758) DNA excision repair pr (323 aa)
initn: 1912 init1: 1887 opt: 1887 Z-score: 1664.3 bits: 316.1 E(85289): 5.8e-86
Smith-Waterman score: 1887; 99.3% identity (99.6% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_973 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_973 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_973 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_973 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::.: :
NP_973 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKVRALGKNPRSWGKERAPNK
250 260 270 280 290 300
NP_973 HNLRPQSFKVKKEPKTRHSGFRL
310 320
297 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:05:16 2016 done: Mon Nov 7 02:05:17 2016
Total Scan time: 8.180 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]