Result of FASTA (ccds) for
pFN21AE2306
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2306, 297 aa
1>>>pF1KE2306 297 - 297 aa - 297 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1981+/-0.000786; mu= 7.3478+/- 0.047
mean_var=122.4737+/-24.340, 0's: 0 Z-trim(112.2): 12 B-trim: 35 in 1/51
Lambda= 0.115892
statistics sampled from 12981 (12988) to 12981 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.399), width: 16
Scan time: 2.390
The best scores are: opt bits E(32554)
CCDS12662.1 ERCC1 gene_id:2067|Hs108|chr19 ( 297) 1987 342.7 1.9e-94
CCDS12663.1 ERCC1 gene_id:2067|Hs108|chr19 ( 323) 1887 326.0 2.2e-89
CCDS54279.1 ERCC1 gene_id:2067|Hs108|chr19 ( 273) 1587 275.8 2.5e-74
>>CCDS12662.1 ERCC1 gene_id:2067|Hs108|chr19 (297 aa)
initn: 1987 init1: 1987 opt: 1987 Z-score: 1809.0 bits: 342.7 E(32554): 1.9e-94
Smith-Waterman score: 1987; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
250 260 270 280 290
>>CCDS12663.1 ERCC1 gene_id:2067|Hs108|chr19 (323 aa)
initn: 1912 init1: 1887 opt: 1887 Z-score: 1718.0 bits: 326.0 E(32554): 2.2e-89
Smith-Waterman score: 1887; 99.3% identity (99.6% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
190 200 210 220 230 240
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::::.: :
CCDS12 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKVRALGKNPRSWGKERAPNK
250 260 270 280 290 300
CCDS12 HNLRPQSFKVKKEPKTRHSGFRL
310 320
>>CCDS54279.1 ERCC1 gene_id:2067|Hs108|chr19 (273 aa)
initn: 1612 init1: 1587 opt: 1587 Z-score: 1448.1 bits: 275.8 E(32554): 2.5e-74
Smith-Waterman score: 1785; 91.9% identity (91.9% similar) in 297 aa overlap (1-297:1-273)
10 20 30 40 50 60
pF1KE2 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSR------
190 200 210 220 230
250 260 270 280 290
pF1KE2 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
:::::::::::::::::::::::::::::::::::::::
CCDS54 ------------------SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP
240 250 260 270
297 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:05:15 2016 done: Mon Nov 7 02:05:16 2016
Total Scan time: 2.390 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]