Result of FASTA (omim) for
pFN21AE2282
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2282, 131 aa
1>>>pF1KE2282 131 - 131 aa - 131 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1849+/-0.000281; mu= 13.3032+/- 0.018
mean_var=80.3445+/-16.295, 0's: 0 Z-trim(119.7): 10 B-trim: 569 in 1/56
Lambda= 0.143086
statistics sampled from 34058 (34068) to 34058 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.399), width: 16
Scan time: 5.180
The best scores are: opt bits E(85289)
XP_005259319 (OMIM: 607419) PREDICTED: gem-associa ( 131) 874 188.7 2.3e-48
NP_001007270 (OMIM: 607419) gem-associated protein ( 131) 874 188.7 2.3e-48
NP_001305984 (OMIM: 607419) gem-associated protein ( 131) 874 188.7 2.3e-48
NP_001305983 (OMIM: 607419) gem-associated protein ( 131) 874 188.7 2.3e-48
NP_001007271 (OMIM: 607419) gem-associated protein ( 131) 874 188.7 2.3e-48
XP_016882801 (OMIM: 607419) PREDICTED: gem-associa ( 131) 874 188.7 2.3e-48
XP_005259320 (OMIM: 607419) PREDICTED: gem-associa ( 131) 874 188.7 2.3e-48
NP_078983 (OMIM: 607419) gem-associated protein 7 ( 131) 874 188.7 2.3e-48
>>XP_005259319 (OMIM: 607419) PREDICTED: gem-associated (131 aa)
initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
70 80 90 100 110 120
130
pF1KE2 CSDIISYTFKP
:::::::::::
XP_005 CSDIISYTFKP
130
>>NP_001007270 (OMIM: 607419) gem-associated protein 7 [ (131 aa)
initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
70 80 90 100 110 120
130
pF1KE2 CSDIISYTFKP
:::::::::::
NP_001 CSDIISYTFKP
130
>>NP_001305984 (OMIM: 607419) gem-associated protein 7 [ (131 aa)
initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
70 80 90 100 110 120
130
pF1KE2 CSDIISYTFKP
:::::::::::
NP_001 CSDIISYTFKP
130
>>NP_001305983 (OMIM: 607419) gem-associated protein 7 [ (131 aa)
initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
70 80 90 100 110 120
130
pF1KE2 CSDIISYTFKP
:::::::::::
NP_001 CSDIISYTFKP
130
>>NP_001007271 (OMIM: 607419) gem-associated protein 7 [ (131 aa)
initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
70 80 90 100 110 120
130
pF1KE2 CSDIISYTFKP
:::::::::::
NP_001 CSDIISYTFKP
130
>>XP_016882801 (OMIM: 607419) PREDICTED: gem-associated (131 aa)
initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
70 80 90 100 110 120
130
pF1KE2 CSDIISYTFKP
:::::::::::
XP_016 CSDIISYTFKP
130
>>XP_005259320 (OMIM: 607419) PREDICTED: gem-associated (131 aa)
initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
70 80 90 100 110 120
130
pF1KE2 CSDIISYTFKP
:::::::::::
XP_005 CSDIISYTFKP
130
>>NP_078983 (OMIM: 607419) gem-associated protein 7 [Hom (131 aa)
initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
70 80 90 100 110 120
130
pF1KE2 CSDIISYTFKP
:::::::::::
NP_078 CSDIISYTFKP
130
131 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:21:17 2016 done: Sun Nov 6 13:21:17 2016
Total Scan time: 5.180 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]