FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2272, 213 aa
  1>>>pF1KE2272 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7395+/-0.00104; mu= 9.0872+/- 0.063
 mean_var=124.9574+/-24.401, 0's: 0 Z-trim(107.6): 26  B-trim: 0 in 0/53
 Lambda= 0.114734
 statistics sampled from 9654 (9673) to 9654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.297), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3         ( 213) 1310 227.4 5.2e-60
CCDS58840.1 CHMP2B gene_id:25978|Hs108|chr3        ( 172) 1056 185.3   2e-47
CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19       ( 222)  427 81.3 5.3e-16


>>CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3              (213 aa)
 initn: 1310 init1: 1310 opt: 1310  Z-score: 1190.9  bits: 227.4 E(32554): 5.2e-60
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE2 MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 TLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 TLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAK
              130       140       150       160       170       180

              190       200       210   
pF1KE2 APSAARSLPSASTSKATISDEEIERQLKALGVD
       :::::::::::::::::::::::::::::::::
CCDS29 APSAARSLPSASTSKATISDEEIERQLKALGVD
              190       200       210   

>>CCDS58840.1 CHMP2B gene_id:25978|Hs108|chr3             (172 aa)
 initn: 1056 init1: 1056 opt: 1056  Z-score: 965.0  bits: 185.3 E(32554): 2e-47
Smith-Waterman score: 1056; 99.4% identity (100.0% similar) in 172 aa overlap (42-213:1-172)

              20        30        40        50        60        70 
pF1KE2 DVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQ
                                     .:::::::::::::::::::::::::::::
CCDS58                               MELEIKKMAKIGNKEACKVLAKQLVHLRKQ
                                             10        20        30

              80        90       100       110       120       130 
pF1KE2 KTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKE
               40        50        60        70        80        90

             140       150       160       170       180       190 
pF1KE2 NMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSA
              100       110       120       130       140       150

             200       210   
pF1KE2 STSKATISDEEIERQLKALGVD
       ::::::::::::::::::::::
CCDS58 STSKATISDEEIERQLKALGVD
              160       170  

>>CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19            (222 aa)
 initn: 482 init1: 365 opt: 427  Z-score: 400.7  bits: 81.3 E(32554): 5.3e-16
Smith-Waterman score: 427; 33.3% identity (69.8% similar) in 222 aa overlap (1-213:1-222)

                10        20        30        40        50         
pF1KE2 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK
       :  :: ..:: ........: :  ..: . :.:  :: :::..  .:::::: :. .: .
CCDS12 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE2 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ
       ..::.::. :.   .   . ... ..: . ....:. .:: ::. ..:.: ..:...   
CCDS12 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE2 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA
       .  . :..:...   :.: :::.::..:: .   .:::::. .:.:::::.:. .. ...
CCDS12 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS
              130       140       150       160       170       180

     180       190               200       210   
pF1KE2 KAPSAARSLPSASTSK---ATIS-----DEEIERQLKALGVD
       . ::.. ::  :. .:   :. :     : ..:..:: :  :
CCDS12 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD
              190       200       210       220  




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:44:19 2016 done: Sun Nov  6 17:44:19 2016
 Total Scan time:  2.120 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]